Genomicus v101.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PHOX2B (ENSG00000109132) (Human)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	534 species
Bilateria	~580 Mya	532 species
Chordata	~550 Mya	528 species
Vertebrata	~550 Mya	524 species	549 homologs (oldest homol.)
Gnathostomata	~473 Mya	520 species	544 homologs
Euteleostomi	~420 Mya	518 species	542 homologs
Sarcopterygii	~400 Mya	356 species	342 homologs
Tetrapoda	~359 Mya	354 species	340 homologs
Amniota	~326 Mya	350 species	336 homologs
Mammalia	~184 Mya	212 species	209 homologs
Theria	~166 Mya	210 species	207 homologs
Eutheria	~102 Mya	200 species	197 homologs
Boreoeutheria	~95 Mya	190 species	188 homologs
Euarchontoglires	~90 Mya	108 species	105 homologs
Primates	~83 Mya	53 species	53 homologs
Haplorrhini	~57 Mya	45 species	45 homologs
Simiiformes	~45 Mya	43 species	43 homologs
Catarrhini	~30 Mya	35 species	35 homologs
Hominoidea	~25 Mya	11 species	11 homologs
Hominidae	~16 Mya	9 species	9 homologs
Homo/Pan/Gorilla group	~9 Mya	7 species	7 homologs
Homo/Pan group	~5 Mya	5 species	5 homologs
Human	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here