Root species for PHOX2B (ENSG00000109132) (Human) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 490 species | |
Bilateria | ~580 Mya | 488 species | |
Chordata | ~550 Mya | 484 species | |
Vertebrata | ~550 Mya | 480 species | 505 homologs (oldest homol.) |
Gnathostomata | ~473 Mya | 476 species | 500 homologs |
Euteleostomi | ~420 Mya | 474 species | 498 homologs |
Sarcopterygii | ~400 Mya | 320 species | 310 homologs |
Tetrapoda | ~359 Mya | 318 species | 308 homologs |
Amniota | ~326 Mya | 316 species | 306 homologs |
Mammalia | ~184 Mya | 200 species | 197 homologs |
Theria | ~166 Mya | 198 species | 195 homologs |
Eutheria | ~102 Mya | 188 species | 185 homologs |
Boreoeutheria | ~95 Mya | 178 species | 176 homologs |
Euarchontoglires | ~90 Mya | 106 species | 103 homologs |
Primates | ~83 Mya | 53 species | 53 homologs |
Haplorrhini | ~57 Mya | 45 species | 45 homologs |
Simiiformes | ~45 Mya | 43 species | 43 homologs |
Catarrhini | ~30 Mya | 35 species | 35 homologs |
Hominoidea | ~25 Mya | 11 species | 11 homologs |
Hominidae | ~16 Mya | 9 species | 9 homologs |
Homo/Pan/Gorilla group | ~9 Mya | 7 species | 7 homologs |
Homo/Pan group | ~5 Mya | 5 species | 5 homologs |
Human | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'