Root species for FeSOD (PF08_0071) (Plasmodium falciparum 3D7) | AlignView depth | PhyloView depth | |
---|---|---|---|
Eukaryota | ~10 Mya | 155 species | 547 homologs (oldest homol. - dupl. node) 348 homologs (dupl. node) 333 homologs (dupl. node) 223 homologs (dupl. node) 221 homologs (dupl. node) 193 homologs (dupl. node) 174 homologs (dupl. node) 85 homologs |
Alveolata | ~10 Mya | 55 species | 84 homologs (dupl. node) 50 homologs (dupl. node) 43 homologs |
Apicomplexa | ~10 Mya | 43 species | 41 homologs |
Aconoidasida | ~10 Mya | 25 species | 25 homologs |
Plasmodium | ~10 Mya | 14 species | 14 homologs |
Plasmodium (Laverania) | ~10 Mya | 3 species | 3 homologs |
Plasmodium falciparum 3D7 | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'