DYOGEN group
web-code version: 2014-07-06
database version: 30.01
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GenomicusProtists 30.01 contains 0 genes from 0 extant species.
This data was downloaded from EnsemblGenomes release .
A "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
| Stramenopiles | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
|---|---|---|---|---|---|---|---|
| Aphanomyces astaci | (extant sp.) | 26259 | 413 | 63.0 | 316 | 242 | 99.1% |
| Hyaloperonospora arabidopsidis Emoy2 | (extant sp.) | 14321 | 528 | 26.4 | 73 | 371 | 97.4% |
| Phytophthora lateralis MPF4 | (extant sp.) | 11635 | 1469 | 7.2 | 11 | 996 | 91.4% |
| Phytophthora sojae | (extant sp.) | 18969 | 538 | 34.7 | 133 | 274 | 98.6% |
| Nannochloropsis gaditana CCMP526 | (extant sp.) | 3554 | 727 | 4.2 | 5 | 522 | 85.3% |
| Phytophthora kernoviae 00238 432 | (extant sp.) | 10650 | 902 | 11.4 | 19 | 367 | 96.6% |
| Pythium irregulare DAOM BR486 | (extant sp.) | 13805 | 1920 | 6.3 | 9 | 1803 | 86.9% |
| Albugo laibachii Nc14 | (extant sp.) | 13804 | 663 | 20.5 | 37 | 189 | 98.6% |
| Albugo candida | (extant sp.) | 13310 | 706 | 18.4 | 40 | 337 | 97.5% |
| Thalassiosira oceanica | (extant sp.) | 34500 | 7266 | 2.8 | 3 | 14352 | 58.4% |
| Saprolegnia parasitica CBS 223.65 | (extant sp.) | 20121 | 1041 | 19.0 | 119 | 332 | 98.3% |
| Thalassiosira pseudonana CCMP1335 | (extant sp.) | 11674 | 60 | 194.5 | 710 | 2 | 100.0% |
| Pythium arrhenomanes ATCC 12531 | (extant sp.) | 13805 | 2589 | 4.2 | 5 | 3043 | 78.0% |
| Blastocystis hominis | (extant sp.) | 6020 | 35 | 171.9 | 306 | 4 | 99.9% |
| Saprolegnia diclina VS20 | (extant sp.) | 18229 | 270 | 67.2 | 247 | 88 | 99.5% |
| Phaeodactylum tricornutum CCAP 1055 1 | (extant sp.) | 12178 | 71 | 171.3 | 436 | 14 | 99.9% |
| Pythium vexans DAOM BR484 | (extant sp.) | 11958 | 1412 | 7.7 | 11 | 1101 | 90.8% |
| Pythium aphanidermatum DAOM BR444 | (extant sp.) | 12312 | 1256 | 9.6 | 15 | 264 | 97.9% |
| Phytophthora parasitica P1569 | (extant sp.) | 28117 | 2632 | 10.2 | 19 | 1239 | 95.6% |
| Pythium iwayamai DAOM BR242034 | (extant sp.) | 15249 | 2862 | 4.3 | 5 | 2975 | 80.5% |
| Phytophthora ramorum | (extant sp.) | 15605 | 853 | 17.2 | 111 | 929 | 94.0% |
| Phytophthora infestans T30-4 | (extant sp.) | 17787 | 384 | 45.3 | 314 | 392 | 97.8% |
| Pythium ultimum DAOM BR144 | (extant sp.) | 15322 | 153 | 98.6 | 303 | 238 | 98.4% |
| Aphanomyces invadans | (extant sp.) | 20816 | 218 | 94.8 | 471 | 141 | 99.3% |
| Aureococcus anophagefferens | (extant sp.) | 11520 | 369 | 29.4 | 317 | 660 | 94.3% |
| Trypanosomatidae | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Leishmania donovani | (extant sp.) | 8032 | 36 | 223.1 | 257 | 0 | 100.0% |
| Phytomonas sp. isolate Hart1 | (extant sp.) | 6451 | 56 | 115.0 | 477 | 10 | 99.8% |
| Phytomonas sp. isolate EM1 | (extant sp.) | 6381 | 87 | 73.1 | 193 | 17 | 99.7% |
| Trypanosoma cruzi | (extant sp.) | 30454 | 4064 | 6.1 | 9 | 5687 | 81.3% |
| Trypanosoma rangeli SC58 | (extant sp.) | 7475 | 35 | 2.2 | 2 | 7398 | 1.0% |
| Leishmania panamensis | (extant sp.) | 7748 | 35 | 221.4 | 266 | 0 | 100.0% |
| Leishmania braziliensis MHOM BR 75 M2904 | (extant sp.) | 8160 | 67 | 121.0 | 262 | 50 | 99.4% |
| Leishmania mexicana MHOM GT 2001 U1103 | (extant sp.) | 8147 | 67 | 120.5 | 270 | 71 | 99.1% |
| Trypanosoma brucei | (extant sp.) | 8747 | 11 | 795.2 | 1224 | 0 | 100.0% |
| Angomonas deanei | (extant sp.) | 16888 | 987 | 3.1 | 3 | 13855 | 18.0% |
| Leishmania infantum JPCM5 | (extant sp.) | 8150 | 47 | 173.1 | 261 | 15 | 99.8% |
| Strigomonas culicis | (extant sp.) | 12083 | 465 | 2.7 | 3 | 10810 | 10.5% |
| Leishmania major strain Friedlin | (extant sp.) | 8308 | 36 | 230.8 | 264 | 0 | 100.0% |
| Alveolata | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Eimeria mitis | (extant sp.) | 8748 | 1975 | 3.1 | 3 | 2664 | 69.5% |
| Eimeria necatrix | (extant sp.) | 8609 | 1163 | 7.0 | 10 | 443 | 94.9% |
| Plasmodium vinckei petteri | (extant sp.) | 5160 | 37 | 138.8 | 369 | 25 | 99.5% |
| Ichthyophthirius multifiliis | (extant sp.) | 8056 | 917 | 8.4 | 13 | 338 | 95.8% |
| Gregarina niphandrodes | (extant sp.) | 6375 | 193 | 32.4 | 97 | 121 | 98.1% |
| Plasmodium knowlesi strain H | (extant sp.) | 5102 | 14 | 364.4 | 460 | 0 | 100.0% |
| Theileria parva | (extant sp.) | 4079 | 9 | 453.2 | 958 | 0 | 100.0% |
| Plasmodium cynomolgi strain B | (extant sp.) | 5716 | 48 | 105.6 | 436 | 649 | 88.6% |
| Tetrahymena thermophila SB210 | (extant sp.) | 24725 | 517 | 47.3 | 137 | 287 | 98.8% |
| Babesia equi strain WA | (extant sp.) | 5329 | 12 | 444.1 | 1142 | 0 | 100.0% |
| Cryptosporidium muris RN66 | (extant sp.) | 3934 | 26 | 150.7 | 329 | 16 | 99.6% |
| Theileria orientalis strain Shintoku | (extant sp.) | 4002 | 5 | 800.2 | 1011 | 1 | 100.0% |
| Stylonychia lemnae | (extant sp.) | 20740 | 2883 | 2.3 | 2 | 14251 | 31.3% |
| Plasmodium falciparum 3D7 | (extant sp.) | 5414 | 14 | 386.7 | 406 | 0 | 100.0% |
| Toxoplasma gondii ME49 | (extant sp.) | 7988 | 22 | 361.0 | 824 | 45 | 99.4% |
| Plasmodium berghei ANKA | (extant sp.) | 4855 | 15 | 323.7 | 439 | 0 | 100.0% |
| Babesia microti strain RI | (extant sp.) | 2503 | 4 | 625.8 | 837 | 0 | 100.0% |
| Paramecium tetraurelia | (extant sp.) | 39642 | 417 | 94.4 | 239 | 259 | 99.3% |
| Plasmodium yoelii yoelii | (extant sp.) | 7861 | 2077 | 3.4 | 4 | 854 | 89.1% |
| Plasmodium inui San Antonio 1 | (extant sp.) | 5832 | 181 | 31.9 | 154 | 64 | 98.9% |
| Plasmodium chabaudi | (extant sp.) | 5119 | 15 | 341.3 | 422 | 0 | 100.0% |
| Plasmodium vivax | (extant sp.) | 5050 | 14 | 360.7 | 432 | 0 | 100.0% |
| Babesia bigemina | (extant sp.) | 5079 | 141 | 34.6 | 1252 | 201 | 96.0% |
| Babesia bovis | (extant sp.) | 3703 | 12 | 308.5 | 834 | 1 | 100.0% |
| Eimeria maxima | (extant sp.) | 6057 | 1111 | 4.7 | 6 | 801 | 86.8% |
| Plasmodium reichenowi | (extant sp.) | 5630 | 129 | 42.7 | 383 | 121 | 97.9% |
| Eimeria praecox | (extant sp.) | 7635 | 1481 | 3.4 | 4 | 2594 | 66.0% |
| Cryptosporidium parvum Iowa II | (extant sp.) | 3805 | 8 | 475.6 | 460 | 0 | 100.0% |
| Oxytricha trifallax | (extant sp.) | 25388 | 3753 | 2.2 | 2 | 17050 | 32.8% |
| Eimeria acervulina | (extant sp.) | 6867 | 1171 | 5.0 | 7 | 970 | 85.9% |
| Eimeria brunetti | (extant sp.) | 8711 | 1454 | 5.6 | 7 | 605 | 93.1% |
| Eimeria tenella | (extant sp.) | 8815 | 749 | 8.9 | 39 | 2152 | 75.6% |
| Perkinsus marinus ATCC 50983 | (extant sp.) | 23654 | 1273 | 14.5 | 66 | 5168 | 78.2% |
| Theileria annulata | (extant sp.) | 3795 | 8 | 474.4 | 945 | 0 | 100.0% |
| Hammondia hammondi | (extant sp.) | 8004 | 86 | 92.5 | 227 | 53 | 99.3% |
| Vitrella brassicaformis CCMP3155 | (extant sp.) | 23034 | 863 | 26.6 | 48 | 114 | 99.5% |
| Amoebozoa | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Entamoeba histolytica HM-1:IMSS | (extant sp.) | 8113 | 505 | 15.5 | 28 | 292 | 96.4% |
| Dictyostelium purpureum | (extant sp.) | 12399 | 763 | 16.2 | 25 | 30 | 99.8% |
| Entamoeba dispar SAW760 | (extant sp.) | 8811 | 802 | 10.2 | 19 | 633 | 92.8% |
| Entamoeba nuttalli P19 | (extant sp.) | 6187 | 1206 | 4.8 | 6 | 393 | 93.6% |
| Entamoeba invadens IP1 | (extant sp.) | 9925 | 305 | 32.0 | 94 | 179 | 98.2% |
| Dictyostelium discoideum | (extant sp.) | 13237 | 33 | 401.0 | 2102 | 4 | 100.0% |
| Polysphondylium pallidum PN500 | (extant sp.) | 12367 | 41 | 301.6 | 550 | 2 | 100.0% |
| Dictyostelium fasciculatum | (extant sp.) | 12165 | 23 | 528.8 | 955 | 2 | 100.0% |
| Acanthamoeba castellanii str. Neff | (extant sp.) | 14974 | 374 | 40.0 | 149 | 8 | 99.9% |
| Eukaryota | Age | Genes | Contigs | Average size (nb genes) | N50 size (nb genes) | Genes not in contigs | Coverage (%) |
| Salpingoeca rosetta | (extant sp.) | 11731 | 103 | 113.4 | 322 | 47 | 99.6% |
| Emiliania huxleyi CCMP1516 | (extant sp.) | 38554 | 1557 | 23.3 | 106 | 2289 | 94.1% |
| Thecamonas trahens ATCC 50062 | (extant sp.) | 10626 | 113 | 94.0 | 160 | 9 | 99.9% |
| Spironucleus salmonicida | (extant sp.) | 8333 | 214 | 38.9 | 99 | 10 | 99.9% |
| Plasmodiophora brassicae | (extant sp.) | 9727 | 130 | 74.8 | 231 | 2 | 100.0% |
| Capsaspora owczarzaki ATCC 30864 | (extant sp.) | 10123 | 65 | 155.5 | 624 | 13 | 99.9% |
| Naegleria gruberi | (extant sp.) | 15711 | 300 | 51.4 | 175 | 295 | 98.1% |
| Giardia lamblia ATCC 50803 | (extant sp.) | 7364 | 112 | 65.3 | 146 | 49 | 99.3% |
| Lotharella oceanica | (extant sp.) | 668 | 4 | 167.0 | 203 | 0 | 100.0% |
| Monosiga brevicollis MX1 | (extant sp.) | 9172 | 85 | 106.8 | 247 | 93 | 99.0% |
| Chondrus crispus | (extant sp.) | 9807 | 544 | 17.8 | 31 | 113 | 98.8% |
| Bigelowiella natans CCMP2755 | (extant sp.) | 21706 | 204 | 106.1 | 200 | 56 | 99.7% |
| Galdieria sulphuraria | (extant sp.) | 7174 | 221 | 32.0 | 101 | 92 | 98.7% |
| Reticulomyxa filosa | (extant sp.) | 39963 | 8124 | 3.0 | 3 | 15558 | 61.1% |
| Guillardia theta CCMP2712 | (extant sp.) | 24969 | 502 | 49.5 | 161 | 109 | 99.6% |
| Fonticula alba | (extant sp.) | 6309 | 61 | 102.0 | 662 | 86 | 98.6% |
| Trichomonas vaginalis G3 | (extant sp.) | 59681 | 6308 | 7.8 | 27 | 10704 | 82.1% |
| Chroomonas mesostigmatica CCMP1168 | (extant sp.) | 505 | 3 | 168.3 | 169 | 0 | 100.0% |
| Paulinella chromatophora | (extant sp.) | 867 | 1 | 867.0 | 867 | 0 | 100.0% |
| Cryptomonas paramecium | (extant sp.) | 466 | 3 | 155.3 | 155 | 0 | 100.0% |