Genomicus v30.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for GE19330 (FBgn0068352) (Drosophila yakuba)		AlignView depth	PhyloView depth
Metazoa	~10 Mya	92 species
Eumetazoa	~10 Mya	89 species
Bilateria	~10 Mya	86 species
Protostomia	~10 Mya	83 species
Ecdysozoa	~10 Mya	75 species
Arthropoda	~10 Mya	60 species
Mandibulata	~10 Mya	56 species
Pancrustacea	~10 Mya	54 species	47 homologs (oldest homol.)
Neoptera	~10 Mya	52 species	45 homologs
Endopterygota	~10 Mya	45 species	43 homologs
Diptera	~10 Mya	28 species	32 homologs
Cyclorrhapha	~10 Mya	20 species	23 homologs
Drosophila	~10 Mya	18 species	22 homologs (dupl. node) 19 homologs
Sophophora	~10 Mya	13 species	15 homologs
melanogaster group	~10 Mya	8 species	10 homologs
melanogaster subgroup	~10 Mya	6 species	8 homologs
Drosophila yakuba	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here