Genomicus v97.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00950000182725.A.b.b.b.a (Equus)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	358 species
Bilateria	~580 Mya	356 species	2506 homologs (oldest homol. - dupl. node) 1989 homologs
Chordata	~550 Mya	352 species	1988 homologs
Vertebrata	~550 Mya	348 species	1987 homologs
Gnathostomata	~473 Mya	344 species	1983 homologs (dupl. node) 1973 homologs (dupl. node) 1000 homologs (dupl. node) 627 homologs (dupl. node) 184 homologs
Euteleostomi	~420 Mya	342 species	183 homologs
Sarcopterygii	~400 Mya	241 species	104 homologs
Tetrapoda	~359 Mya	239 species	102 homologs
Amniota	~326 Mya	237 species	101 homologs
Mammalia	~184 Mya	169 species	63 homologs
Theria	~166 Mya	167 species	62 homologs
Eutheria	~102 Mya	158 species	55 homologs
Boreoeutheria	~95 Mya	149 species	51 homologs
Laurasiatheria	~88 Mya	44 species	28 homologs
Equus	~7 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here