Genomicus v97.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for LRRC75A (ENSMUNG00000004694) (Budgerigar)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	358 species
Bilateria	~580 Mya	356 species
Chordata	~550 Mya	352 species
Vertebrata	~550 Mya	348 species	345 homologs (oldest homol.)
Gnathostomata	~473 Mya	344 species	342 homologs
Euteleostomi	~420 Mya	342 species	340 homologs
Sarcopterygii	~400 Mya	241 species	226 homologs
Tetrapoda	~359 Mya	239 species	225 homologs
Amniota	~326 Mya	237 species	224 homologs
Sauria	~267 Mya	67 species	66 homologs
Archelosauria	~250 Mya	57 species	56 homologs
Archosauria	~236 Mya	49 species	48 homologs
Aves	~111 Mya	47 species	46 homologs
Neognathae	~105 Mya	37 species	36 homologs
Neognathae_b	~105 Mya	25 species	25 homologs
Neognathae_c	~105 Mya	5 species	5 homologs
Budgerigar	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here