Root species for LRRC75A (ENSMUNG00000004694) (Budgerigar) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 358 species | |
Bilateria | ~580 Mya | 356 species | |
Chordata | ~550 Mya | 352 species | |
Vertebrata | ~550 Mya | 348 species | 345 homologs (oldest homol.) |
Gnathostomata | ~473 Mya | 344 species | 342 homologs |
Euteleostomi | ~420 Mya | 342 species | 340 homologs |
Sarcopterygii | ~400 Mya | 241 species | 226 homologs |
Tetrapoda | ~359 Mya | 239 species | 225 homologs |
Amniota | ~326 Mya | 237 species | 224 homologs |
Sauria | ~267 Mya | 67 species | 66 homologs |
Archelosauria | ~250 Mya | 57 species | 56 homologs |
Archosauria | ~236 Mya | 49 species | 48 homologs |
Aves | ~111 Mya | 47 species | 46 homologs |
Neognathae | ~105 Mya | 37 species | 36 homologs |
Neognathae_b | ~105 Mya | 25 species | 25 homologs |
Neognathae_c | ~105 Mya | 5 species | 5 homologs |
Budgerigar | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'