Genomicus v97.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000160429.b (NAME_8)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	358 species
Bilateria	~580 Mya	356 species
Chordata	~550 Mya	352 species
Vertebrata	~550 Mya	348 species	444 homologs (oldest homol.)
Gnathostomata	~473 Mya	344 species	441 homologs (dupl. node) 337 homologs
Euteleostomi	~420 Mya	342 species	335 homologs
Neopterygii	~314 Mya	100 species	101 homologs
Osteoglossocephalai	~267 Mya	98 species	99 homologs
Clupeocephala	~229 Mya	94 species	95 homologs
Euteleosteomorpha	~206 Mya	84 species	85 homologs
Acanthomorphata	~148 Mya	80 species	79 homologs
Percomorphaceae	~128 Mya	78 species	77 homologs
Percomorphaceae_A	~128 Mya	76 species	75 homologs
Percomorphaceae_B	~128 Mya	74 species	73 homologs
NAME_3	~128 Mya	64 species	64 homologs
Ovalentaria	~111 Mya	49 species	49 homologs
Atherinomorphae	~93 Mya	27 species	27 homologs
Oryzias	~10 Mya	7 species	7 homologs
Oryzias latipes	~2 Mya	5 species	5 homologs
NAME_8	~0 Mya	3 species	3 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here