Root species for BNIP1 (ENSSBOG00000029104) (Bolivian squirrel monkey) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 358 species | 465 homologs (oldest homol.) |
Bilateria | ~580 Mya | 356 species | 463 homologs |
Chordata | ~550 Mya | 352 species | 459 homologs |
Vertebrata | ~550 Mya | 348 species | 456 homologs |
Gnathostomata | ~473 Mya | 344 species | 453 homologs |
Euteleostomi | ~420 Mya | 342 species | 451 homologs |
Sarcopterygii | ~400 Mya | 241 species | 252 homologs |
Tetrapoda | ~359 Mya | 239 species | 250 homologs |
Amniota | ~326 Mya | 237 species | 248 homologs |
Mammalia | ~184 Mya | 169 species | 180 homologs |
Theria | ~166 Mya | 167 species | 178 homologs |
Eutheria | ~102 Mya | 158 species | 168 homologs |
Boreoeutheria | ~95 Mya | 149 species | 155 homologs |
Euarchontoglires | ~90 Mya | 104 species | 108 homologs |
Primates | ~83 Mya | 45 species | 47 homologs |
Haplorrhini | ~57 Mya | 38 species | 38 homologs |
Simiiformes | ~45 Mya | 36 species | 36 homologs |
Platyrrhini | ~19 Mya | 6 species | 6 homologs |
Cebidae | ~19 Mya | 4 species | 4 homologs |
Bolivian squirrel monkey | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'