Statistics on modern & ancestral genomes
Genomicus 41.01 contains 2120850 genes from 66 extant species.
This data was analysed with a new method called AGORA (Algorithm for Gene Order Reconstruction in Ancestors; Muffato et al. in preparation) to identify 1667699 ancestral genes from 48 ancestral species, grouped into 64839 blocks of collinear genes.
The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.
- For extant species, a "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
- The average block length, the N25, N50 and N75 values do not take into account the singletons (blocks of one gene).
| |
| Dicotyledones |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Arabidopsis lyrata subsp. lyrata | (extant sp.) | 32667 | 273 | 119.1 | 4113 | 164 | 99.5% |
| Arabidopsis thaliana | (extant sp.) | 27628 | 7 | 3946.9 | 5455 | 0 | 100.0% |
| Beta vulgaris subsp. vulgaris | (extant sp.) | 26521 | 416 | 57.1 | 2014 | 2782 | 89.5% |
| Brassica napus | (extant sp.) | 101040 | 3981 | 24.4 | 101 | 3960 | 96.1% |
| Brassica oleracea var. oleracea | (extant sp.) | 59220 | 435 | 130.6 | 5842 | 2421 | 95.9% |
| Brassica rapa subsp. pekinensis | (extant sp.) | 41018 | 147 | 278.1 | 3999 | 137 | 99.7% |
| Corchorus capsularis | (extant sp.) | 29356 | 4827 | 5.3 | 7 | 3591 | 87.8% |
| Cucumis sativus | (extant sp.) | 23780 | 7 | 3397.1 | 3497 | 0 | 100.0% |
| Daucus carota subsp. sativus | (extant sp.) | 32109 | 135 | 235.9 | 3740 | 264 | 99.2% |
| Glycine max | (extant sp.) | 56679 | 81 | 698.9 | 2769 | 65 | 99.9% |
| Gossypium raimondii | (extant sp.) | 38208 | 85 | 448.9 | 2804 | 48 | 99.9% |
| Helianthus annuus | (extant sp.) | 52191 | 105 | 496.2 | 3156 | 86 | 99.8% |
| Lupinus angustifolius | (extant sp.) | 14121 | 171 | 82.0 | 669 | 93 | 99.3% |
| Manihot esculenta | (extant sp.) | 33044 | 239 | 137.3 | 1747 | 240 | 99.3% |
| Medicago truncatula | (extant sp.) | 50444 | 432 | 115.4 | 6160 | 601 | 98.8% |
| Nicotiana attenuata | (extant sp.) | 33320 | 3625 | 8.5 | 13 | 2351 | 92.9% |
| Phaseolus vulgaris | (extant sp.) | 28134 | 34 | 825.8 | 2779 | 57 | 99.8% |
| Populus trichocarpa | (extant sp.) | 41335 | 274 | 150.5 | 2242 | 105 | 99.7% |
| Prunus persica | (extant sp.) | 26873 | 24 | 1118.9 | 3161 | 19 | 99.9% |
| Solanum lycopersicum | (extant sp.) | 33785 | 12 | 2815.4 | 2543 | 0 | 100.0% |
| Solanum tuberosum | (extant sp.) | 39021 | 13 | 3001.6 | 3012 | 0 | 100.0% |
| Theobroma cacao | (extant sp.) | 29188 | 50 | 582.8 | 3178 | 48 | 99.8% |
| Trifolium pratense | (extant sp.) | 39917 | 1301 | 25.1 | 3162 | 7292 | 81.7% |
| Vigna angularis | (extant sp.) | 33860 | 279 | 121.2 | 2767 | 42 | 99.9% |
| Vigna radiata var. radiata | (extant sp.) | 26893 | 281 | 94.7 | 1698 | 291 | 98.9% |
| Vitis vinifera | (extant sp.) | 29927 | 33 | 906.9 | 1450 | 0 | 100.0% |
| |
| Monocotyledones |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Aegilops tauschii | (extant sp.) | 33928 | 8109 | 3.2 | 3 | 8267 | 75.6% |
| Brachypodium distachyon | (extant sp.) | 34310 | 7 | 4901.0 | 7631 | 3 | 100.0% |
| Dioscorea rotundata | (extant sp.) | 19023 | 21 | 905.9 | 918 | 0 | 100.0% |
| Hordeum vulgare subsp. vulgare | (extant sp.) | 37705 | 10 | 3770.5 | 5280 | 0 | 100.0% |
| Leersia perrieri | (extant sp.) | 29078 | 12 | 2423.2 | 2381 | 0 | 100.0% |
| Musa acuminata subsp. malaccensis | (extant sp.) | 36519 | 12 | 3043.2 | 3106 | 0 | 100.0% |
| Oryza barthii | (extant sp.) | 34575 | 12 | 2881.2 | 2803 | 0 | 100.0% |
| Oryza brachyantha | (extant sp.) | 32037 | 130 | 245.8 | 2613 | 80 | 99.8% |
| Oryza glaberrima | (extant sp.) | 33164 | 410 | 79.7 | 2508 | 494 | 98.5% |
| Oryza glumipatula | (extant sp.) | 35735 | 12 | 2977.9 | 2939 | 0 | 100.0% |
| Oryza longistaminata | (extant sp.) | 31686 | 3435 | 7.6 | 12 | 5709 | 82.0% |
| Oryza meridionalis | (extant sp.) | 29308 | 12 | 2442.3 | 2532 | 0 | 100.0% |
| Oryza nivara | (extant sp.) | 36313 | 12 | 3026.1 | 2977 | 0 | 100.0% |
| Oryza punctata | (extant sp.) | 31762 | 12 | 2646.8 | 2537 | 0 | 100.0% |
| Oryza rufipogon | (extant sp.) | 37071 | 12 | 3089.2 | 3004 | 0 | 100.0% |
| Oryza sativa Indica Group | (extant sp.) | 40745 | 608 | 64.8 | 3163 | 1371 | 96.6% |
| Oryza sativa Japonica Group | (extant sp.) | 35821 | 14 | 2558.6 | 2971 | 0 | 100.0% |
| Setaria italica | (extant sp.) | 35831 | 31 | 1154.4 | 4252 | 45 | 99.9% |
| Sorghum bicolor | (extant sp.) | 34118 | 21 | 1621.5 | 3784 | 66 | 99.8% |
| Triticum aestivum A | (extant sp.) | 35239 | 7 | 5034.1 | 5213 | 0 | 100.0% |
| Triticum aestivum B | (extant sp.) | 35523 | 7 | 5074.7 | 4848 | 0 | 100.0% |
| Triticum aestivum D | (extant sp.) | 34124 | 7 | 4874.9 | 5306 | 0 | 100.0% |
| Triticum aestivum U | (extant sp.) | 2659 | 1 | 2659.0 | 2659 | 0 | 100.0% |
| Triticum dicoccoides A | (extant sp.) | 51501 | 7 | 7357.3 | 7611 | 0 | 100.0% |
| Triticum dicoccoides B | (extant sp.) | 54813 | 7 | 7830.4 | 7468 | 0 | 100.0% |
| Triticum urartu | (extant sp.) | 33483 | 7941 | 3.1 | 3 | 8795 | 73.7% |
| Zea mays | (extant sp.) | 39591 | 65 | 608.4 | 4115 | 43 | 99.9% |
| |
| Other Plants |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Amborella trichopoda | (extant sp.) | 27313 | 420 | 63.0 | 232 | 848 | 96.9% |
| Chlamydomonas reinhardtii | (extant sp.) | 17743 | 48 | 369.6 | 1253 | 4 | 100.0% |
| Ostreococcus lucimarinus | (extant sp.) | 7603 | 21 | 362.0 | 421 | 0 | 100.0% |
| Physcomitrella patens | (extant sp.) | 31248 | 74 | 421.5 | 1166 | 54 | 99.8% |
| Selaginella moellendorffii | (extant sp.) | 34799 | 340 | 102.1 | 310 | 80 | 99.8% |
| |
| Other eukaryotes |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Caenorhabditis elegans | (extant sp.) | 20222 | 7 | 2888.9 | 3305 | 0 | 100.0% |
| Chondrus crispus | (extant sp.) | 9807 | 544 | 17.8 | 31 | 113 | 98.8% |
| Ciona savignyi | (extant sp.) | 11616 | 285 | 40.6 | 143 | 59 | 99.5% |
| Cyanidioschyzon merolae | (extant sp.) | 4998 | 22 | 227.2 | 249 | 0 | 100.0% |
| Drosophila melanogaster | (extant sp.) | 13931 | 9 | 1547.6 | 2731 | 3 | 100.0% |
| Galdieria sulphuraria | (extant sp.) | 6622 | 221 | 29.5 | 90 | 92 | 98.6% |
| Homo sapiens | (extant sp.) | 22407 | 263 | 84.9 | 877 | 76 | 99.7% |
| Saccharomyces cerevisiae | (extant sp.) | 6600 | 17 | 388.2 | 505 | 0 | 100.0% |
| |
| Ancestors |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Andropogoneae | Unknown | 30432 | 578 | 37.6 | 2122 | 8703 | 71.4% |
| Arabidopsis | Unknown | 27871 | 122 | 188.7 | 2244 | 4853 | 82.6% |
| BOP_clade | Unknown | 45575 | 936 | 23.0 | 742 | 24079 | 47.2% |
| Bilateria | Unknown | 8753 | 28 | 2.0 | 2 | 8696 | 0.7% |
| Brassica | Unknown | 96375 | 8763 | 7.0 | 14 | 34627 | 64.1% |
| Brassicaceae | Unknown | 31511 | 767 | 24.1 | 85 | 13027 | 58.7% |
| Chlorophyta | Unknown | 7489 | 25 | 2.0 | 2 | 7439 | 0.7% |
| Chordata | Unknown | 8275 | 39 | 2.0 | 2 | 8197 | 0.9% |
| Cyanidiaceae | Unknown | 4930 | 93 | 3.2 | 2 | 4637 | 5.9% |
| Ecdysozoa | Unknown | 7969 | 16 | 2.1 | 2 | 7936 | 0.4% |
| Embryophyta | Unknown | 14741 | 97 | 2.1 | 2 | 14534 | 1.4% |
| Eukaryota | Unknown | 9490 | 68 | 2.2 | 2 | 9341 | 1.6% |
| Magnoliophyta | Unknown | 25419 | 96 | 2.5 | 2 | 25181 | 0.9% |
| Malpighiales | Unknown | 24048 | 854 | 19.7 | 176 | 7266 | 69.8% |
| Malvaceae | Unknown | 28455 | 871 | 21.4 | 474 | 9848 | 65.4% |
| Mesangiospermae | Unknown | 38526 | 1600 | 3.1 | 3 | 33598 | 12.8% |
| NAME_4 | Unknown | 43755 | 947 | 28.4 | 1781 | 16838 | 61.5% |
| NAME_5 | Unknown | 74346 | 4195 | 10.2 | 1208 | 31694 | 57.4% |
| NAME_6 | Unknown | 69225 | 3861 | 11.6 | 1311 | 24450 | 64.7% |
| NAME_7 | Unknown | 49024 | 2401 | 15.9 | 2479 | 10821 | 77.9% |
| NAME_8 | Unknown | 51632 | 2249 | 17.3 | 1145 | 12639 | 75.5% |
| NAME_9 | Unknown | 44795 | 1547 | 22.8 | 2438 | 9455 | 78.9% |
| Opisthokonta | Unknown | 6346 | 34 | 2.0 | 2 | 6278 | 1.1% |
| Oryza | Unknown | 41729 | 816 | 30.5 | 1914 | 16865 | 59.6% |
| Oryza_sativa | Unknown | 66100 | 3911 | 11.6 | 2001 | 20551 | 68.9% |
| Oryzinae | Unknown | 40533 | 799 | 29.5 | 1565 | 16999 | 58.1% |
| Panicoideae | Unknown | 32278 | 524 | 41.3 | 1775 | 10647 | 67.0% |
| Papilionoideae | Unknown | 36232 | 927 | 21.9 | 184 | 15951 | 56.0% |
| Pentapetalae | Unknown | 55408 | 2004 | 7.7 | 82 | 39968 | 27.9% |
| Petrosaviidae | Unknown | 30299 | 2015 | 3.1 | 3 | 24148 | 20.3% |
| Phaseoleae | Unknown | 32871 | 608 | 38.9 | 1207 | 9218 | 72.0% |
| Poaceae | Unknown | 43455 | 1059 | 19.0 | 514 | 23361 | 46.2% |
| Pooideae | Unknown | 38426 | 940 | 21.6 | 863 | 18114 | 52.9% |
| Rhodophyta | Unknown | 5681 | 52 | 3.8 | 4 | 5481 | 3.5% |
| Solanaceae | Unknown | 26795 | 2225 | 6.6 | 16 | 12111 | 54.8% |
| Solanum | Unknown | 29653 | 579 | 35.8 | 839 | 8911 | 69.9% |
| Tracheophyta | Unknown | 16647 | 118 | 2.4 | 2 | 16363 | 1.7% |
| Trifolieae | Unknown | 32071 | 535 | 37.5 | 639 | 12023 | 62.5% |
| Triticeae | Unknown | 44677 | 1836 | 11.5 | 363 | 23503 | 47.4% |
| Triticum | Unknown | 74872 | 3419 | 11.0 | 1036 | 37207 | 50.3% |
| Vigna | Unknown | 26948 | 245 | 92.9 | 1334 | 4199 | 84.4% |
| Viridiplantae | Unknown | 10170 | 75 | 2.2 | 2 | 10006 | 1.6% |
| asterids | Unknown | 32401 | 1546 | 8.6 | 66 | 19089 | 41.1% |
| campanulids | Unknown | 25474 | 2356 | 4.4 | 6 | 15073 | 40.8% |
| commelinids | Unknown | 30214 | 2115 | 3.0 | 3 | 23906 | 20.9% |
| fabids | Unknown | 45960 | 1842 | 11.9 | 287 | 24128 | 47.5% |
| malvids | Unknown | 38693 | 1407 | 12.7 | 274 | 20767 | 46.3% |
| rosids | Unknown | 61130 | 2699 | 8.7 | 503 | 37707 | 38.3% |
Contact us.
