Root species for GRMZM2G028033 (Zea mays) | AlignView depth | PhyloView depth | |
---|---|---|---|
Viridiplantae | ~10 Mya | 84 species | |
Embryophyta | ~10 Mya | 80 species | |
Tracheophyta | ~10 Mya | 78 species | 596 homologs (oldest homol. - dupl. node) 585 homologs (dupl. node) 575 homologs (dupl. node) 564 homologs (dupl. node) 539 homologs (dupl. node) 522 homologs (dupl. node) 511 homologs (dupl. node) 505 homologs (dupl. node) 497 homologs (dupl. node) 494 homologs (dupl. node) 443 homologs (dupl. node) 427 homologs (dupl. node) 191 homologs |
Magnoliophyta | ~10 Mya | 76 species | 183 homologs |
Mesangiospermae | ~10 Mya | 74 species | 181 homologs |
Commelinids | ~10 Mya | 31 species | 99 homologs |
Poaceae | ~10 Mya | 29 species | 91 homologs (dupl. node) 50 homologs |
Panicoideae | ~10 Mya | 5 species | 6 homologs |
Andropogoneae | ~10 Mya | 3 species | 4 homologs |
Zea mays | ~0 Mya | 1 species | 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'