Root species for BRADI2G34810 (Brachypodium distachyon) | AlignView depth | PhyloView depth | |
---|---|---|---|
Viridiplantae | ~10 Mya | 84 species | 180 homologs (oldest homol. - dupl. node) 167 homologs |
Embryophyta | ~10 Mya | 80 species | 163 homologs |
Tracheophyta | ~10 Mya | 78 species | 157 homologs |
Magnoliophyta | ~10 Mya | 76 species | 153 homologs |
Mesangiospermae | ~10 Mya | 74 species | 151 homologs |
Commelinids | ~10 Mya | 31 species | 70 homologs |
Poaceae | ~10 Mya | 29 species | 64 homologs (dupl. node) 41 homologs |
BEP clade | ~10 Mya | 23 species | 35 homologs |
Pooideae | ~10 Mya | 8 species | 20 homologs (dupl. node) 5 homologs |
Brachypodium distachyon | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'