Genomicus v30.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for cyl-1 (WBGene00000876) (Caenorhabditis elegans)		AlignView depth	PhyloView depth
Metazoa	~10 Mya	92 species	398 homologs (oldest homol. - dupl. node) 349 homologs (dupl. node) 252 homologs (dupl. node) 124 homologs
Eumetazoa	~10 Mya	89 species	121 homologs
Bilateria	~10 Mya	86 species	119 homologs (dupl. node) 117 homologs (dupl. node) 106 homologs
Protostomia	~10 Mya	83 species	104 homologs
Ecdysozoa	~10 Mya	75 species	96 homologs
Nematoda	~10 Mya	14 species	24 homologs
Chromadorea	~10 Mya	12 species	22 homologs
Caenorhabditis	~10 Mya	6 species	10 homologs
Caenorhabditis elegans	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here