Root species for Andorra (FBgn0030898) (Drosophila melanogaster) | AlignView depth | PhyloView depth | |
---|---|---|---|
Metazoa | ~10 Mya | 92 species | |
Eumetazoa | ~10 Mya | 89 species | |
Bilateria | ~10 Mya | 86 species | |
Protostomia | ~10 Mya | 83 species | |
Ecdysozoa | ~10 Mya | 75 species | |
Arthropoda | ~10 Mya | 60 species | |
Mandibulata | ~10 Mya | 56 species | |
Pancrustacea | ~10 Mya | 54 species | |
Neoptera | ~10 Mya | 52 species | |
Endopterygota | ~10 Mya | 45 species | |
Diptera | ~10 Mya | 28 species | |
Cyclorrhapha | ~10 Mya | 20 species | |
Drosophila | ~10 Mya | 18 species | 15 homologs (oldest homol.) |
Sophophora | ~10 Mya | 13 species | 10 homologs |
melanogaster group | ~10 Mya | 8 species | 8 homologs |
melanogaster subgroup | ~10 Mya | 6 species | 6 homologs |
Drosophila melanogaster | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'