Root species for cyl-1 (WBGene00000876) (Caenorhabditis elegans) | AlignView depth | PhyloView depth | |
---|---|---|---|
Metazoa | ~10 Mya | 92 species | 398 homologs (oldest homol. - dupl. node) 349 homologs (dupl. node) 252 homologs (dupl. node) 124 homologs |
Eumetazoa | ~10 Mya | 89 species | 121 homologs |
Bilateria | ~10 Mya | 86 species | 119 homologs (dupl. node) 117 homologs (dupl. node) 106 homologs |
Protostomia | ~10 Mya | 83 species | 104 homologs |
Ecdysozoa | ~10 Mya | 75 species | 96 homologs |
Nematoda | ~10 Mya | 14 species | 24 homologs |
Chromadorea | ~10 Mya | 12 species | 22 homologs |
Caenorhabditis | ~10 Mya | 6 species | 10 homologs |
Caenorhabditis elegans | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'