Root species for CAGL0F01529g (Candida glabrata) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi | ~10 Mya | 713 species | 418 homologs (oldest homol.) |
Dikarya | ~10 Mya | 634 species | 365 homologs (dupl. node) 359 homologs |
Ascomycota | ~10 Mya | 443 species | 129 homologs |
saccharomyceta | ~10 Mya | 429 species | 115 homologs |
Saccharomycetales | ~10 Mya | 94 species | 114 homologs (dupl. node) 109 homologs (dupl. node) 102 homologs (dupl. node) 99 homologs (dupl. node) 42 homologs |
Saccharomycetaceae | ~10 Mya | 37 species | 39 homologs (dupl. node) 29 homologs |
Candida glabrata | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'