Genomicus v99.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for EGR2 (ENSG00000122877) (Human)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	452 species
Bilateria	~580 Mya	450 species
Chordata	~550 Mya	446 species
Vertebrata	~550 Mya	442 species
Gnathostomata	~473 Mya	438 species	595 homologs (oldest homol.)
Euteleostomi	~420 Mya	436 species	593 homologs (dupl. node) 379 homologs
Sarcopterygii	~400 Mya	296 species	277 homologs
Tetrapoda	~359 Mya	294 species	276 homologs
Amniota	~326 Mya	292 species	275 homologs
Mammalia	~184 Mya	194 species	189 homologs
Theria	~166 Mya	192 species	188 homologs
Eutheria	~102 Mya	182 species	179 homologs
Boreoeutheria	~95 Mya	172 species	169 homologs
Euarchontoglires	~90 Mya	106 species	105 homologs
Primates	~83 Mya	53 species	53 homologs
Haplorrhini	~57 Mya	45 species	45 homologs
Simiiformes	~45 Mya	43 species	43 homologs
Catarrhini	~30 Mya	35 species	35 homologs
Hominoidea	~25 Mya	11 species	11 homologs
Hominidae	~16 Mya	9 species	9 homologs
Homo/Pan/Gorilla group	~9 Mya	7 species	7 homologs
Homo/Pan group	~5 Mya	5 species	5 homologs
Human	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here