Genomicus v90.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PHOX2B (ENSG00000109132) (Human)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	159 species
Bilateria	~580 Mya	157 species	1658 homologs (oldest homol. - dupl. node) 1641 homologs (dupl. node) 141 homologs
Chordata	~550 Mya	153 species	140 homologs
Vertebrata	~550 Mya	149 species	139 homologs
Euteleostomi	~420 Mya	147 species	138 homologs
Sarcopterygii	~400 Mya	125 species	116 homologs
Tetrapoda	~359 Mya	123 species	114 homologs
Amniota	~326 Mya	121 species	112 homologs
Mammalia	~184 Mya	107 species	100 homologs
Theria	~166 Mya	105 species	99 homologs
Eutheria	~102 Mya	99 species	93 homologs
Boreoeutheria	~95 Mya	90 species	85 homologs
Euarchontoglires	~90 Mya	67 species	63 homologs
Primates	~83 Mya	22 species	20 homologs
Haplorrhini	~57 Mya	18 species	16 homologs
Simiiformes	~45 Mya	16 species	15 homologs
Catarrhini	~31 Mya	14 species	13 homologs
Hominoidea	~25 Mya	9 species	9 homologs
Hominidae	~16 Mya	7 species	7 homologs
Homo/Pan/Gorilla group	~9 Mya	5 species	5 homologs
Homo/Pan group	~5 Mya	3 species	3 homologs
Human	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here