Root species for Cirobu.g00004295,FGF16,FGF20,FGF9 (KH.C2.125) (Cirobu) | AlignView depth | PhyloView depth | |
---|---|---|---|
40_Deuterostomia | ~10 Mya | 41 species | |
36_Chordata | ~10 Mya | 37 species | 234 homologs (oldest homol. - dupl. node) 201 homologs (dupl. node) 198 homologs (dupl. node) 72 homologs (dupl. node) 23 homologs |
32_Olfactores | ~10 Mya | 33 species | 22 homologs |
20_Ascidiacea | ~10 Mya | 21 species | 21 homologs (dupl. node) 13 homologs |
19_Phlebobranchia | ~10 Mya | 7 species | 7 homologs |
15_Ciona | ~10 Mya | 3 species | 3 homologs |
Cirobu | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'