DYOGEN group
web-code version: 2017-06-13
database version: 02.01
Contact us.
|
|
|
|
Genomicus 02.01 contains 367427 genes from 17 extant species. This data was analysed with a new method called AGORA (Algorithm for Gene Order Reconstruction in Ancestors; Muffato et al. in preparation) to identify 220326 ancestral genes from 16 ancestral species, grouped into 14932 blocks of collinear genes.
The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.
| 34 | Age | Genes | Contigs | Average size (nb genes) |
N50 size (nb genes) |
Genes not in contigs |
Coverage (%) |
|---|---|---|---|---|---|---|---|
| Boschl | (extant sp.) | 46519 | 14 | 3322.8 | 32007 | 0 | 100.0% |
| Cirobu | (extant sp.) | 15284 | 545 | 27.5 | 688 | 321 | 97.9% |
| Moocci | (extant sp.) | 30639 | 5894 | 4.6 | 6 | 3485 | 88.6% |
| Psin | (extant sp.) | 18189 | 1467 | 11.9 | 23 | 726 | 96.0% |
| Ggal | (extant sp.) | 15508 | 133 | 111.5 | 521 | 676 | 95.6% |
| Lcha | (extant sp.) | 19569 | 2510 | 7.2 | 11 | 1464 | 92.5% |
| Bbel | (extant sp.) | 30392 | 771 | 38.6 | 168 | 596 | 98.0% |
| Hsap | (extant sp.) | 22072 | 219 | 100.5 | 900 | 68 | 99.7% |
| Cisavi | (extant sp.) | 11616 | 285 | 40.6 | 143 | 59 | 99.5% |
| Mmus | (extant sp.) | 22166 | 57 | 388.7 | 1111 | 10 | 100.0% |
| Phmamm | (extant sp.) | 19508 | 2356 | 7.3 | 13 | 2196 | 88.7% |
| Skow | (extant sp.) | 34239 | 2285 | 14.4 | 29 | 1368 | 96.0% |
| Harore | (extant sp.) | 16083 | 942 | 16.3 | 34 | 702 | 95.6% |
| Phfumi | (extant sp.) | 10052 | 1924 | 3.1 | 3 | 4083 | 59.4% |
| Spur | (extant sp.) | 28842 | 2871 | 9.6 | 16 | 1338 | 95.4% |
| Haaura | (extant sp.) | 11436 | 1807 | 5.4 | 8 | 1704 | 85.1% |
| Moocul | (extant sp.) | 15313 | 2958 | 4.5 | 6 | 1953 | 87.2% |
| Other ancestors | Age | Genes | Blocks | Average size (nb genes) |
N50 size (nb genes) |
Genes not in blocks |
Coverage (%) |
| 24_Euarchontoglires | ~10 My | 11905 | 255 | 41.3 | 133 | 1381 | 88.4% |
| 25_Amniota | ~10 My | 15256 | 1013 | 8.1 | 19 | 7057 | 53.7% |
| 26_Sarcopterygii | ~10 My | 16900 | 1412 | 3.4 | 4 | 12112 | 28.3% |
| 15_Phlebobranchia | ~10 My | 12379 | 1348 | 2.6 | 2 | 8888 | 28.2% |
| 21_Archelosauria | ~10 My | 12888 | 810 | 10.0 | 27 | 4752 | 63.1% |
| 16_Ascidiacea | ~10 My | 16095 | 680 | 2.2 | 2 | 14571 | 9.5% |
| 33 | ~10 My | 11290 | 712 | 2.2 | 2 | 9704 | 14.0% |
| 30_Chordata | ~10 My | 17131 | 665 | 2.2 | 2 | 15688 | 8.4% |
| 28 | ~10 My | 14874 | 313 | 2.1 | 2 | 14222 | 4.4% |
| 34_Deuterostomia | ~10 My | 17236 | 602 | 2.2 | 2 | 15925 | 7.6% |
| 2_Molgula | ~10 My | 12554 | 1031 | 2.3 | 2 | 10168 | 19.0% |
| 7 | ~10 My | 12549 | 698 | 2.3 | 2 | 10971 | 12.6% |
| 6_Halocynthia | ~10 My | 9963 | 1375 | 4.4 | 6 | 3929 | 60.6% |
| 11_Ciona | ~10 My | 11248 | 1464 | 4.0 | 5 | 5384 | 52.1% |
| 8_Stolidobranchia | ~10 My | 16086 | 840 | 2.3 | 2 | 14174 | 11.9% |
| 14_Phallusia | ~10 My | 11972 | 1714 | 3.0 | 3 | 6829 | 43.0% |