Root species for TUBG2 (Zm00001d037582) (Zea mays) | AlignView depth | PhyloView depth | |
---|---|---|---|
Eukaryota | ~10 Mya | 114 species | 170 homologs (oldest homol. - dupl. node) 151 homologs |
Viridiplantae | ~10 Mya | 99 species | 150 homologs |
Embryophyta | ~10 Mya | 95 species | 146 homologs (dupl. node) 138 homologs |
Tracheophyta | ~10 Mya | 93 species | 137 homologs |
Magnoliophyta | ~10 Mya | 91 species | 136 homologs |
Mesangiospermae | ~10 Mya | 89 species | 130 homologs |
Petrosaviidae | ~10 Mya | 45 species | 52 homologs |
commelinids | ~10 Mya | 43 species | 50 homologs |
Poaceae | ~10 Mya | 41 species | 48 homologs |
Panicoideae | ~10 Mya | 5 species | 9 homologs |
Andropogoneae | ~10 Mya | 3 species | 7 homologs |
Zea mays | ~0 Mya | 1 species | 5 homologs (dupl. node) 4 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'