Genomicus v30.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ANIA_00774 (CADANIAG00001889) (Aspergillus nidulans FGSC A4)		AlignView depth	PhyloView depth
Fungi	~10 Mya	465 species	782 homologs (oldest homol.)
Dikarya	~10 Mya	420 species	772 homologs (dupl. node) 767 homologs (dupl. node) 627 homologs (dupl. node) 597 homologs
Ascomycota	~10 Mya	307 species	468 homologs (dupl. node) 465 homologs (dupl. node) 122 homologs (dupl. node) 80 homologs
saccharomyceta	~10 Mya	297 species	79 homologs
Pezizomycotina	~10 Mya	240 species	78 homologs
leotiomyceta	~10 Mya	231 species	77 homologs
Eurotiomycetes	~10 Mya	91 species	71 homologs
Eurotiomycetidae	~10 Mya	64 species	70 homologs
Eurotiales	~10 Mya	36 species	39 homologs (dupl. node) 27 homologs
Aspergillaceae	~10 Mya	27 species	20 homologs (dupl. node) 10 homologs
Aspergillus	~10 Mya	15 species	9 homologs
Aspergillus nidulans FGSC A4	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here