Root species for CAF130 (YGR134W) (Saccharomyces cerevisiae S288c) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi | ~10 Mya | 465 species | |
Dikarya | ~10 Mya | 420 species | |
Ascomycota | ~10 Mya | 307 species | |
saccharomyceta | ~10 Mya | 297 species | |
Saccharomycetales | ~10 Mya | 56 species | 72 homologs (oldest homol. - dupl. node) 60 homologs |
Saccharomycetaceae | ~10 Mya | 29 species | 37 homologs (dupl. node) 20 homologs |
Saccharomyces | ~10 Mya | 5 species | 4 homologs |
Saccharomyces cerevisiae S288c | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'