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Genomicus v97.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 97.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for BNIP1 (ENSPCOG00000018899) (Coquerels sifaka) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 358 species 465 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 356 species 463 homologs
Chordata Chordata ~550 Mya 352 species 459 homologs
Vertebrata Vertebrata ~550 Mya 348 species 456 homologs
Gnathostomata Gnathostomata ~473 Mya 344 species 453 homologs
Euteleostomi Euteleostomi ~420 Mya 342 species 451 homologs
Sarcopterygii Sarcopterygii ~400 Mya 241 species 252 homologs
Tetrapoda Tetrapoda ~359 Mya 239 species 250 homologs
Amniota Amniota ~326 Mya 237 species 248 homologs
Mammalia Mammalia ~184 Mya 169 species 180 homologs
Theria Theria ~166 Mya 167 species 178 homologs
Eutheria Eutheria ~102 Mya 158 species 168 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 155 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 108 homologs
Primates Primates ~83 Mya 45 species 47 homologs
Strepsirrhini Strepsirrhini ~69 Mya 6 species 8 homologs
Lemuriformes Lemuriformes ~37 Mya 4 species 6 homologs
Coquerels sifaka Coquerels sifaka ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'