Statistics on modern & ancestral genomes
Genomicus 96.01 contains 3726082 genes from 188 extant species.
This data was analysed with a new method called AGORA (Algorithm for Gene Order Reconstruction in Ancestors; Muffato et al. in preparation) to identify 3672255 ancestral genes from 162 ancestral species, grouped into 71286 blocks of collinear genes.
The following tables present statistics on the data used in Genomicus, and on the reconstructed blocks in the ancestral species.
- For extant species, a "contig" means a segment of the genome sequence assembly (chromosomes, scaffolds, contig) with at least two genes.
- The average block length, the N25, N50 and N75 values do not take into account the singletons (blocks of one gene).
| |
| Primates |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Angola colobus | (extant sp.) | 20467 | 615 | 33.1 | 66 | 114 | 99.4% |
| Black snub-nosed monkey | (extant sp.) | 20824 | 1495 | 13.3 | 24 | 1002 | 95.2% |
| Bolivian squirrel monkey | (extant sp.) | 19290 | 267 | 72.1 | 146 | 50 | 99.7% |
| Bushbaby | (extant sp.) | 19506 | 374 | 51.8 | 115 | 151 | 99.2% |
| Capuchin | (extant sp.) | 20200 | 832 | 24.0 | 51 | 201 | 99.0% |
| Chimpanzee | (extant sp.) | 23302 | 250 | 91.8 | 963 | 351 | 98.5% |
| Coquerels sifaka | (extant sp.) | 17884 | 624 | 28.4 | 53 | 184 | 99.0% |
| Crab-eating macaque | (extant sp.) | 21404 | 73 | 290.5 | 1154 | 198 | 99.1% |
| Drill | (extant sp.) | 20660 | 1214 | 16.8 | 31 | 314 | 98.5% |
| Gelada | (extant sp.) | 22360 | 72 | 306.0 | 1158 | 329 | 98.5% |
| Gibbon | (extant sp.) | 20648 | 108 | 189.1 | 821 | 224 | 98.9% |
| Golden snub-nosed monkey | (extant sp.) | 21132 | 1763 | 11.4 | 20 | 986 | 95.3% |
| Gorilla | (extant sp.) | 21587 | 54 | 394.8 | 1004 | 266 | 98.8% |
| Greater bamboo lemur | (extant sp.) | 20277 | 1339 | 14.5 | 27 | 845 | 95.8% |
| Human | (extant sp.) | 22449 | 263 | 85.1 | 879 | 76 | 99.7% |
| Marmoset | (extant sp.) | 19563 | 56 | 346.6 | 997 | 156 | 99.2% |
| Mas night monkey | (extant sp.) | 20320 | 630 | 31.8 | 65 | 263 | 98.7% |
| Mouse lemur | (extant sp.) | 18816 | 44 | 427.0 | 737 | 29 | 99.8% |
| Olive baboon | (extant sp.) | 21464 | 131 | 161.8 | 1138 | 269 | 98.7% |
| Orangutan | (extant sp.) | 20424 | 53 | 385.4 | 843 | 0 | 100.0% |
| Pig-tailed macaque | (extant sp.) | 20872 | 341 | 60.9 | 117 | 100 | 99.5% |
| Rhesus | (extant sp.) | 21099 | 58 | 356.9 | 1118 | 400 | 98.1% |
| Sooty mangabey | (extant sp.) | 20746 | 415 | 49.7 | 107 | 127 | 99.4% |
| Tarsier | (extant sp.) | 18304 | 3258 | 4.8 | 6 | 2616 | 85.7% |
| Ugandan red Colobus | (extant sp.) | 24443 | 682 | 31.7 | 102 | 2842 | 88.4% |
| Vervet Monkey | (extant sp.) | 19165 | 54 | 353.7 | 696 | 65 | 99.7% |
| pygmy chimpanzee | (extant sp.) | 21041 | 71 | 294.2 | 946 | 153 | 99.3% |
| |
| Rodents etc. |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Alpin marmot | (extant sp.) | 20350 | 203 | 98.7 | 250 | 324 | 98.4% |
| American beaver | (extant sp.) | 20600 | 3291 | 5.4 | 7 | 2965 | 85.6% |
| Arctic ground squirrel | (extant sp.) | 19640 | 965 | 20.0 | 39 | 343 | 98.3% |
| Brazilian-Guinea pig | (extant sp.) | 14218 | 235 | 60.4 | 182 | 35 | 99.8% |
| Chinese hamster CHOK1GS | (extant sp.) | 20824 | 130 | 159.1 | 606 | 146 | 99.3% |
| Chinese hamster Crigri-PICR | (extant sp.) | 21972 | 373 | 58.2 | 193 | 254 | 98.8% |
| Cricetulus griseus Crigri | (extant sp.) | 19617 | 1997 | 9.3 | 16 | 1134 | 94.2% |
| Damara mole rat | (extant sp.) | 17730 | 728 | 24.1 | 50 | 202 | 98.9% |
| Daurian ground squirrel | (extant sp.) | 21010 | 1631 | 12.3 | 23 | 878 | 95.8% |
| Degu | (extant sp.) | 19982 | 396 | 50.1 | 113 | 130 | 99.3% |
| Golden Hamster | (extant sp.) | 18257 | 312 | 57.0 | 110 | 465 | 97.5% |
| Guinea pig | (extant sp.) | 18095 | 258 | 69.9 | 214 | 61 | 99.7% |
| Kangaroo rat | (extant sp.) | 16911 | 289 | 57.7 | 108 | 239 | 98.6% |
| Lesser Egyptian jerboa | (extant sp.) | 17845 | 238 | 74.7 | 128 | 77 | 99.6% |
| Long-tailed chinchilla | (extant sp.) | 17809 | 212 | 83.7 | 154 | 69 | 99.6% |
| Mongolian gerbil | (extant sp.) | 21116 | 2632 | 7.3 | 13 | 1974 | 90.7% |
| Mouse | (extant sp.) | 22292 | 94 | 237.0 | 1105 | 10 | 100.0% |
| Naked mole-rat female | (extant sp.) | 20774 | 274 | 75.5 | 158 | 92 | 99.6% |
| Naked mole-rat male | (extant sp.) | 20742 | 1965 | 10.2 | 18 | 714 | 96.6% |
| Northern American deer mouse | (extant sp.) | 21644 | 85 | 251.1 | 1171 | 303 | 98.6% |
| Pika | (extant sp.) | 16006 | 3010 | 3.9 | 4 | 4397 | 72.5% |
| Prairie vole | (extant sp.) | 19130 | 192 | 99.1 | 484 | 97 | 99.5% |
| Rabbit | (extant sp.) | 19293 | 581 | 32.4 | 678 | 472 | 97.6% |
| Rat | (extant sp.) | 22245 | 55 | 403.0 | 1311 | 78 | 99.6% |
| Ryukyu mouse | (extant sp.) | 19208 | 20 | 960.4 | 964 | 0 | 100.0% |
| Shrew mouse | (extant sp.) | 19061 | 24 | 794.2 | 925 | 0 | 100.0% |
| Squirrel | (extant sp.) | 18474 | 486 | 37.6 | 90 | 212 | 98.9% |
| Steppe mouse | (extant sp.) | 22907 | 1577 | 13.7 | 29 | 1342 | 94.1% |
| Tree shrew | (extant sp.) | 15471 | 3162 | 3.3 | 4 | 5087 | 67.1% |
| Upper Galilee mountains blind mole rat | (extant sp.) | 18647 | 1079 | 17.0 | 30 | 354 | 98.1% |
| spretus | (extant sp.) | 19476 | 20 | 973.8 | 1044 | 0 | 100.0% |
| |
| Laurasiatherias |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Alpaca | (extant sp.) | 11765 | 2006 | 4.4 | 5 | 2999 | 74.5% |
| American bison | (extant sp.) | 20224 | 727 | 26.2 | 72 | 1158 | 94.3% |
| American black bear | (extant sp.) | 20542 | 3885 | 4.2 | 5 | 4376 | 78.7% |
| American mink | (extant sp.) | 19599 | 669 | 28.9 | 70 | 235 | 98.8% |
| Cat | (extant sp.) | 19409 | 62 | 311.9 | 1087 | 69 | 99.6% |
| Common shrew | (extant sp.) | 13187 | 1965 | 2.7 | 3 | 7946 | 39.7% |
| Cow | (extant sp.) | 21861 | 62 | 351.5 | 845 | 66 | 99.7% |
| Dingo | (extant sp.) | 21307 | 155 | 136.2 | 408 | 193 | 99.1% |
| Dog | (extant sp.) | 19857 | 81 | 243.3 | 606 | 152 | 99.2% |
| Dolphin | (extant sp.) | 16550 | 3179 | 4.4 | 5 | 2472 | 85.1% |
| Donkey | (extant sp.) | 19922 | 410 | 47.9 | 136 | 288 | 98.6% |
| Ferret | (extant sp.) | 19910 | 503 | 39.0 | 96 | 276 | 98.6% |
| Giant Panda | (extant sp.) | 19343 | 1819 | 10.2 | 18 | 799 | 95.9% |
| Goat | (extant sp.) | 21343 | 151 | 137.3 | 735 | 611 | 97.1% |
| Hedgehog | (extant sp.) | 14601 | 2105 | 2.4 | 2 | 9606 | 34.2% |
| Horse | (extant sp.) | 21516 | 129 | 165.5 | 765 | 170 | 99.2% |
| Megabat | (extant sp.) | 16990 | 3187 | 4.3 | 5 | 3198 | 81.2% |
| Microbat | (extant sp.) | 19728 | 1249 | 14.9 | 39 | 1169 | 94.1% |
| Pig | (extant sp.) | 22342 | 194 | 114.5 | 1282 | 127 | 99.4% |
| Polar bear | (extant sp.) | 18699 | 338 | 55.0 | 116 | 120 | 99.4% |
| Red fox | (extant sp.) | 20266 | 357 | 56.3 | 117 | 170 | 99.2% |
| Sheep | (extant sp.) | 20921 | 117 | 174.0 | 870 | 564 | 97.3% |
| Tiger | (extant sp.) | 17544 | 506 | 34.5 | 62 | 62 | 99.6% |
| Wild yak | (extant sp.) | 20832 | 2138 | 9.3 | 15 | 883 | 95.8% |
| leopard | (extant sp.) | 19646 | 301 | 64.6 | 171 | 196 | 99.0% |
| |
| Xenarthras etc. |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Armadillo | (extant sp.) | 22711 | 2554 | 8.3 | 13 | 1448 | 93.6% |
| Sloth | (extant sp.) | 12393 | 1181 | 2.2 | 2 | 9778 | 21.1% |
| |
| Afrotherias etc. |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Elephant | (extant sp.) | 20033 | 355 | 55.8 | 230 | 228 | 98.9% |
| Hyrax | (extant sp.) | 16057 | 2834 | 2.9 | 3 | 7783 | 51.5% |
| Tenrec | (extant sp.) | 16575 | 2559 | 2.6 | 2 | 10047 | 39.4% |
| |
| Marsupials & Monotremes |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Opossum | (extant sp.) | 21327 | 11 | 1938.8 | 2870 | 0 | 100.0% |
| Platypus | (extant sp.) | 21698 | 1855 | 6.8 | 22 | 9138 | 57.9% |
| Tasmanian devil | (extant sp.) | 18788 | 1966 | 8.7 | 15 | 1654 | 91.2% |
| Wallaby | (extant sp.) | 15290 | 1720 | 2.4 | 2 | 11119 | 27.3% |
| koala | (extant sp.) | 19832 | 460 | 42.7 | 97 | 192 | 99.0% |
| |
| Birds & Reptiles |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Abingdon island giant tortoise | (extant sp.) | 20200 | 2039 | 9.6 | 15 | 715 | 96.5% |
| Agassiz s desert tortoise | (extant sp.) | 20135 | 4300 | 3.7 | 4 | 4211 | 79.1% |
| Argentine black and white tegu | (extant sp.) | 19338 | 226 | 84.9 | 201 | 155 | 99.2% |
| Australian saltwater crocodile | (extant sp.) | 15226 | 70 | 217.5 | 392 | 0 | 100.0% |
| Bengalese finch | (extant sp.) | 15917 | 739 | 21.2 | 43 | 279 | 98.2% |
| Blue tit | (extant sp.) | 15470 | 335 | 41.2 | 212 | 1659 | 89.3% |
| Blue-crowned manakin | (extant sp.) | 15320 | 483 | 31.1 | 66 | 303 | 98.0% |
| Budgerigar | (extant sp.) | 14568 | 437 | 31.5 | 128 | 802 | 94.5% |
| Central bearded dragon | (extant sp.) | 19580 | 1184 | 16.0 | 31 | 601 | 96.9% |
| Chicken | (extant sp.) | 16779 | 49 | 341.8 | 546 | 32 | 99.8% |
| Chilean tinamou | (extant sp.) | 15704 | 575 | 26.9 | 54 | 262 | 98.3% |
| Chinese turtle | (extant sp.) | 18189 | 1467 | 11.9 | 23 | 726 | 96.0% |
| Common canary | (extant sp.) | 15225 | 241 | 60.0 | 323 | 753 | 95.1% |
| Dark-eyed junco | (extant sp.) | 14551 | 63 | 226.8 | 516 | 263 | 98.2% |
| Duck | (extant sp.) | 16616 | 318 | 45.4 | 478 | 2171 | 86.9% |
| Emu | (extant sp.) | 15615 | 776 | 19.8 | 39 | 287 | 98.2% |
| Flycatcher | (extant sp.) | 15303 | 491 | 30.5 | 92 | 334 | 97.8% |
| Golden-collared manakin | (extant sp.) | 15928 | 359 | 40.9 | 225 | 1234 | 92.3% |
| Great Tit | (extant sp.) | 15003 | 146 | 101.4 | 512 | 196 | 98.7% |
| Great spotted kiwi | (extant sp.) | 16674 | 1296 | 12.5 | 23 | 513 | 96.9% |
| Helmeted guineafowl | (extant sp.) | 15661 | 176 | 87.5 | 729 | 267 | 98.3% |
| Japanese quail | (extant sp.) | 15732 | 166 | 93.4 | 527 | 225 | 98.6% |
| Little spotted kiwi | (extant sp.) | 16196 | 1077 | 14.5 | 27 | 553 | 96.6% |
| Lizard | (extant sp.) | 18595 | 1055 | 16.3 | 868 | 1370 | 92.6% |
| Mainland tiger snake | (extant sp.) | 18964 | 867 | 19.7 | 63 | 1883 | 90.1% |
| Okarito brown kiwi | (extant sp.) | 16257 | 1060 | 14.9 | 30 | 435 | 97.3% |
| Pink-footed goose | (extant sp.) | 15544 | 591 | 25.8 | 62 | 283 | 98.2% |
| Ruff | (extant sp.) | 16421 | 531 | 30.4 | 113 | 294 | 98.2% |
| Spoon-billed sandpiper | (extant sp.) | 16331 | 963 | 15.9 | 38 | 988 | 94.0% |
| Turkey | (extant sp.) | 14123 | 140 | 97.2 | 505 | 510 | 96.4% |
| White-throated sparrow | (extant sp.) | 13862 | 601 | 22.3 | 58 | 442 | 96.8% |
| Zebra finch | (extant sp.) | 17488 | 68 | 257.2 | 712 | 1 | 100.0% |
| painted turtle | (extant sp.) | 21176 | 910 | 22.1 | 58 | 1047 | 95.1% |
| tuatara | (extant sp.) | 17628 | 1422 | 12.1 | 19 | 473 | 97.3% |
| |
| Amphibians |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Frog | (extant sp.) | 18442 | 1339 | 13.1 | 23 | 902 | 95.1% |
| |
| Fish |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Amazon molly | (extant sp.) | 23615 | 997 | 23.2 | 52 | 509 | 97.8% |
| Asian bonytongue | (extant sp.) | 23797 | 291 | 81.4 | 172 | 109 | 99.5% |
| Ballan wrasse | (extant sp.) | 27270 | 2254 | 11.0 | 36 | 2505 | 90.8% |
| Bicolor damselfish | (extant sp.) | 23080 | 2313 | 9.8 | 15 | 525 | 97.7% |
| Big-finned mudskipper | (extant sp.) | 22252 | 2373 | 8.7 | 16 | 1668 | 92.5% |
| Burton's mouthbrooder | (extant sp.) | 23044 | 1122 | 19.8 | 46 | 866 | 96.2% |
| Cave fish | (extant sp.) | 26662 | 887 | 29.5 | 671 | 482 | 98.2% |
| Channel catfish | (extant sp.) | 23598 | 104 | 223.4 | 841 | 369 | 98.4% |
| Climbing perch | (extant sp.) | 24603 | 48 | 512.4 | 1190 | 8 | 100.0% |
| Clown anemonefish | (extant sp.) | 23555 | 2661 | 8.5 | 13 | 913 | 96.1% |
| Cod | (extant sp.) | 20095 | 2716 | 6.4 | 10 | 2663 | 86.7% |
| Eastern happy | (extant sp.) | 26983 | 139 | 193.8 | 1187 | 50 | 99.8% |
| Fugu | (extant sp.) | 20516 | 589 | 33.2 | 698 | 959 | 95.3% |
| Greater amberjack | (extant sp.) | 23241 | 320 | 72.2 | 208 | 152 | 99.3% |
| Guppy | (extant sp.) | 22857 | 129 | 174.6 | 934 | 332 | 98.5% |
| Indian medaka | (extant sp.) | 23510 | 295 | 78.0 | 759 | 494 | 97.9% |
| Japanese Medaka HNI | (extant sp.) | 22121 | 24 | 921.7 | 950 | 0 | 100.0% |
| Japanese Medaka HSOK | (extant sp.) | 22769 | 24 | 948.7 | 978 | 0 | 100.0% |
| Japanese Medaka HdrR | (extant sp.) | 23600 | 25 | 944.0 | 993 | 0 | 100.0% |
| Lyretail cichlid | (extant sp.) | 23568 | 468 | 49.1 | 157 | 590 | 97.5% |
| Mangrove rivulus | (extant sp.) | 21911 | 1006 | 21.1 | 89 | 652 | 97.0% |
| Midas cichlid | (extant sp.) | 23675 | 1226 | 18.8 | 43 | 616 | 97.4% |
| Monterrey platyfish | (extant sp.) | 20549 | 25 | 822.0 | 844 | 0 | 100.0% |
| Mummichog | (extant sp.) | 23054 | 1377 | 15.9 | 35 | 1116 | 95.2% |
| Northern pike | (extant sp.) | 23925 | 231 | 103.1 | 938 | 119 | 99.5% |
| Ocean sunfish | (extant sp.) | 21397 | 147 | 144.6 | 319 | 146 | 99.3% |
| Orange clownfish | (extant sp.) | 23872 | 31 | 768.7 | 1034 | 41 | 99.8% |
| P. kingsleyae | (extant sp.) | 24782 | 916 | 26.4 | 64 | 579 | 97.7% |
| P. nyererei | (extant sp.) | 23473 | 719 | 31.6 | 92 | 719 | 96.9% |
| Platyfish | (extant sp.) | 23753 | 51 | 465.5 | 1020 | 14 | 99.9% |
| Red-bellied piranha | (extant sp.) | 26675 | 1650 | 15.3 | 41 | 1494 | 94.4% |
| Sailfin molly | (extant sp.) | 23617 | 2953 | 7.6 | 11 | 1252 | 94.7% |
| Sheepshead minnow | (extant sp.) | 22993 | 1772 | 12.6 | 22 | 585 | 97.5% |
| Shortfin molly | (extant sp.) | 24043 | 2945 | 7.7 | 12 | 1319 | 94.5% |
| Spiny chromis | (extant sp.) | 24016 | 2631 | 8.4 | 14 | 1898 | 92.1% |
| Spotted gar | (extant sp.) | 18341 | 186 | 96.8 | 773 | 332 | 98.2% |
| Stickleback | (extant sp.) | 20787 | 261 | 78.5 | 869 | 299 | 98.6% |
| Swamp eel | (extant sp.) | 22121 | 650 | 33.3 | 84 | 508 | 97.7% |
| Tetraodon | (extant sp.) | 19602 | 27 | 726.0 | 767 | 0 | 100.0% |
| Tiger tail seahorse | (extant sp.) | 20850 | 446 | 45.6 | 90 | 518 | 97.5% |
| Tilapia | (extant sp.) | 21437 | 613 | 34.2 | 88 | 468 | 97.8% |
| Tongue sole | (extant sp.) | 21371 | 74 | 284.6 | 955 | 309 | 98.6% |
| Turbot | (extant sp.) | 20997 | 22 | 954.4 | 944 | 0 | 100.0% |
| Western mosquitofish | (extant sp.) | 21712 | 339 | 63.1 | 229 | 338 | 98.4% |
| Yellowtail amberjack | (extant sp.) | 24724 | 924 | 24.5 | 57 | 2116 | 91.4% |
| Zebra mbuna | (extant sp.) | 27156 | 690 | 38.8 | 978 | 357 | 98.7% |
| Zebrafish | (extant sp.) | 30140 | 823 | 36.3 | 943 | 288 | 99.0% |
| Zig-zag eel | (extant sp.) | 23279 | 69 | 337.1 | 1019 | 18 | 99.9% |
| |
| Other chordates |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Ciona intestinalis | (extant sp.) | 16671 | 484 | 33.9 | 816 | 249 | 98.5% |
| Ciona savignyi | (extant sp.) | 11616 | 285 | 40.6 | 143 | 59 | 99.5% |
| Coelacanth | (extant sp.) | 19569 | 2510 | 7.2 | 11 | 1464 | 92.5% |
| Hagfish | (extant sp.) | 16513 | 1328 | 12.3 | 19 | 196 | 98.8% |
| Lamprey | (extant sp.) | 10415 | 1844 | 3.6 | 4 | 3826 | 63.3% |
| |
| Other eukaryotes |
Age |
Genes |
Contigs |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in contigs |
Coverage
(%) |
| Caenorhabditis elegans | (extant sp.) | 20222 | 7 | 2888.9 | 3305 | 0 | 100.0% |
| Fruitfly | (extant sp.) | 13931 | 9 | 1547.6 | 2731 | 3 | 100.0% |
| Yeast | (extant sp.) | 6600 | 17 | 388.2 | 505 | 0 | 100.0% |
| |
| Ancestors in Primates |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Catarrhini | ~30 My | 28320 | 232 | 95.0 | 862 | 6273 | 77.8% |
| Cebidae | ~19 My | 22574 | 177 | 108.5 | 608 | 3373 | 85.1% |
| Cercopithecidae | ~19 My | 28555 | 264 | 86.8 | 894 | 5644 | 80.2% |
| Cercopithecinae | ~13 My | 28144 | 258 | 91.6 | 1020 | 4499 | 84.0% |
| Colobinae | ~14 My | 26848 | 362 | 60.7 | 261 | 4865 | 81.9% |
| Haplorrhini | ~57 My | 24975 | 164 | 119.5 | 715 | 5385 | 78.4% |
| Hominidae | ~16 My | 25002 | 202 | 105.5 | 816 | 3700 | 85.2% |
| Hominoidea | ~25 My | 25396 | 215 | 100.3 | 866 | 3823 | 84.9% |
| Homo/Pan group | ~5 My | 23773 | 180 | 118.6 | 868 | 2418 | 89.8% |
| Homo/Pan/Gorilla group | ~9 My | 24461 | 188 | 114.9 | 936 | 2865 | 88.3% |
| Lemuriformes | ~37 My | 21012 | 230 | 81.3 | 378 | 2323 | 88.9% |
| Macaca | ~5 My | 24398 | 153 | 144.4 | 950 | 2300 | 90.6% |
| Pan | ~3 My | 23037 | 134 | 159.8 | 693 | 1627 | 92.9% |
| Platyrrhini | ~19 My | 23051 | 172 | 112.3 | 584 | 3739 | 83.8% |
| Primates | ~83 My | 25786 | 155 | 129.1 | 887 | 5783 | 77.6% |
| Rhinopithecus | ~3 My | 22389 | 1068 | 18.8 | 43 | 2343 | 89.5% |
| Simiiformes | ~45 My | 26523 | 193 | 105.5 | 774 | 6167 | 76.7% |
| Strepsirrhini | ~69 My | 21453 | 173 | 109.5 | 672 | 2502 | 88.3% |
| |
| Ancestors in Rodents etc. |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Bathyergidae | ~33 My | 19687 | 288 | 61.4 | 192 | 2002 | 89.8% |
| Castorimorpha | ~63 My | 19876 | 360 | 42.8 | 88 | 4458 | 77.6% |
| Cavia | ~4 My | 18165 | 312 | 55.2 | 182 | 946 | 94.8% |
| Cricetidae | ~20 My | 22689 | 164 | 119.9 | 679 | 3026 | 86.7% |
| Cricetidae_B | ~18 My | 20838 | 161 | 118.8 | 532 | 1713 | 91.8% |
| Cricetinae | ~17 My | 21786 | 176 | 110.3 | 749 | 2380 | 89.1% |
| Cricetulus griseus | (extant sp.) | 22710 | 210 | 96.9 | 540 | 2365 | 89.6% |
| Cricetulus griseus_a | (extant sp.) | 21407 | 218 | 92.3 | 369 | 1277 | 94.0% |
| Glires | ~81 My | 25426 | 177 | 111.0 | 805 | 5781 | 77.3% |
| Heterocephalus glaber | (extant sp.) | 21626 | 616 | 31.3 | 97 | 2344 | 89.2% |
| Hystricomorpha | ~42 My | 21122 | 198 | 92.0 | 357 | 2902 | 86.3% |
| Hystricomorpha_a | ~35 My | 20031 | 177 | 100.7 | 300 | 2209 | 89.0% |
| Hystricomorpha_b | ~32 My | 18940 | 203 | 85.4 | 205 | 1610 | 91.5% |
| Lagomorpha | ~48 My | 18566 | 709 | 23.6 | 127 | 1853 | 90.0% |
| Marmotini | ~11 My | 22809 | 316 | 62.3 | 340 | 3122 | 86.3% |
| Marmotini_b | ~11 My | 22349 | 463 | 42.4 | 150 | 2725 | 87.8% |
| Marmotini_c | ~11 My | 21666 | 709 | 27.5 | 71 | 2202 | 89.8% |
| Muridae | ~29 My | 23941 | 182 | 109.1 | 852 | 4080 | 83.0% |
| Murinae | ~20 My | 22035 | 176 | 111.9 | 650 | 2339 | 89.4% |
| Muroidea | ~44 My | 22939 | 223 | 85.8 | 394 | 3797 | 83.4% |
| Mus | ~7 My | 22217 | 151 | 132.0 | 978 | 2285 | 89.7% |
| Mus_A | ~6 My | 22613 | 150 | 134.9 | 1033 | 2385 | 89.5% |
| Mus_B | ~2 My | 23310 | 155 | 132.8 | 960 | 2733 | 88.3% |
| Mus_C | ~2 My | 22706 | 151 | 134.1 | 802 | 2460 | 89.2% |
| Myomorpha | ~51 My | 22904 | 201 | 94.6 | 487 | 3897 | 83.0% |
| Rodentia | ~80 My | 25415 | 190 | 103.4 | 698 | 5773 | 77.3% |
| Sciurognathi | ~79 My | 25121 | 196 | 100.2 | 689 | 5480 | 78.2% |
| |
| Ancestors in Laurasiatherias |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Bos | ~4 My | 22480 | 245 | 83.6 | 393 | 2007 | 91.1% |
| Bovidae | ~25 My | 23661 | 238 | 84.5 | 689 | 3544 | 85.0% |
| Bovinae | ~5 My | 23046 | 243 | 84.1 | 508 | 2609 | 88.7% |
| Canidae | ~14 My | 22031 | 172 | 112.4 | 393 | 2703 | 87.7% |
| Caniformia | ~44 My | 23917 | 168 | 118.0 | 681 | 4089 | 82.9% |
| Caniformia_b | ~44 My | 23072 | 235 | 83.6 | 433 | 3427 | 85.1% |
| Canis lupus | ~1 My | 21440 | 147 | 131.5 | 517 | 2109 | 90.2% |
| Caprinae | ~9 My | 21844 | 217 | 90.5 | 593 | 2206 | 89.9% |
| Carnivora | ~56 My | 24144 | 143 | 139.1 | 878 | 4251 | 82.4% |
| Cetartiodactyla | ~61 My | 23466 | 190 | 104.1 | 668 | 3690 | 84.3% |
| Chiroptera | ~60 My | 18847 | 1103 | 15.4 | 37 | 1830 | 90.3% |
| Equus | ~7 My | 20943 | 215 | 91.1 | 337 | 1347 | 93.6% |
| Felidae | ~15 My | 20433 | 88 | 215.5 | 655 | 1472 | 92.8% |
| Insectivora | ~68 My | 15933 | 2618 | 2.7 | 3 | 8874 | 44.3% |
| Laurasiatheria | ~88 My | 27150 | 190 | 109.2 | 1105 | 6404 | 76.4% |
| Mustelinae | ~8 My | 20367 | 341 | 55.1 | 161 | 1590 | 92.2% |
| Panthera | ~7 My | 19804 | 182 | 102.9 | 350 | 1082 | 94.5% |
| Ursidae | ~23 My | 21994 | 390 | 49.5 | 155 | 2671 | 87.9% |
| Ursus | ~6 My | 21093 | 490 | 38.6 | 110 | 2202 | 89.6% |
| |
| Ancestors in mammals |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Afrotheria | ~94 My | 19901 | 407 | 43.3 | 125 | 2279 | 88.5% |
| Atlantogenata | ~100 My | 21644 | 333 | 55.7 | 242 | 3082 | 85.8% |
| Boreoeutheria | ~95 My | 28977 | 190 | 108.9 | 1085 | 8287 | 71.4% |
| Diprotodontia | ~35 My | 19167 | 546 | 31.1 | 66 | 2191 | 88.6% |
| Euarchontoglires | ~90 My | 28396 | 191 | 107.4 | 877 | 7876 | 72.3% |
| Eutheria | ~102 My | 26670 | 263 | 74.0 | 738 | 7209 | 73.0% |
| Mammalia | ~184 My | 23753 | 660 | 25.8 | 122 | 6707 | 71.8% |
| Marsupialia | ~85 My | 20897 | 257 | 69.8 | 469 | 2970 | 85.8% |
| Marsupialia_b | ~85 My | 20372 | 431 | 41.2 | 120 | 2635 | 87.1% |
| Theria | ~166 My | 24535 | 305 | 59.4 | 407 | 6419 | 73.8% |
| Xenarthra | ~64 My | 19251 | 2089 | 7.7 | 12 | 3174 | 83.5% |
| |
| Ancestors in fish |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Acanthomorphata | ~148 My | 30280 | 1261 | 16.8 | 57 | 9076 | 70.0% |
| Amphiprion | ~3 My | 23994 | 440 | 49.9 | 172 | 2021 | 91.6% |
| Anabantaria | ~81 My | 24225 | 201 | 108.3 | 856 | 2450 | 89.9% |
| Atherinomorphae | ~93 My | 29215 | 360 | 62.5 | 781 | 6714 | 77.0% |
| Carangaria | ~83 My | 25558 | 232 | 95.1 | 840 | 3487 | 86.4% |
| Characiphysae | ~150 My | 24825 | 667 | 31.4 | 92 | 3859 | 84.5% |
| Characoidei | ~110 My | 24472 | 806 | 26.2 | 68 | 3353 | 86.3% |
| Cichlidae | ~95 My | 27175 | 402 | 56.0 | 724 | 4643 | 82.9% |
| Clupeocephala | ~229 My | 31334 | 1352 | 15.8 | 42 | 9907 | 68.4% |
| Cyprinodontiformes | ~74 My | 27839 | 387 | 57.5 | 746 | 5579 | 80.0% |
| Cyprinodontoidei | ~57 My | 28160 | 394 | 57.4 | 701 | 5563 | 80.2% |
| Eupecaria_A | ~110 My | 23438 | 455 | 46.2 | 363 | 2401 | 89.8% |
| Eupercaria | ~110 My | 26290 | 288 | 76.1 | 762 | 4379 | 83.3% |
| Euteleosteomorpha | ~206 My | 30473 | 1051 | 20.5 | 66 | 8920 | 70.7% |
| Haplochromini | ~6 My | 28131 | 480 | 48.9 | 615 | 4651 | 83.5% |
| NAME_10 | ~22 My | 28370 | 469 | 49.8 | 708 | 5036 | 82.2% |
| NAME_11 | ~6 My | 27971 | 464 | 50.8 | 568 | 4397 | 84.3% |
| NAME_12 | ~5 My | 27798 | 454 | 52.4 | 535 | 3989 | 85.7% |
| NAME_13 | ~67 My | 24727 | 441 | 49.5 | 245 | 2906 | 88.2% |
| NAME_14 | ~128 My | 27320 | 243 | 93.3 | 912 | 4648 | 83.0% |
| NAME_3 | ~128 My | 32776 | 330 | 71.3 | 917 | 9254 | 71.8% |
| NAME_4 | ~57 My | 23858 | 725 | 29.2 | 93 | 2673 | 88.8% |
| NAME_5 | ~42 My | 25171 | 281 | 78.4 | 799 | 3130 | 87.6% |
| NAME_6 | ~40 My | 26418 | 832 | 27.4 | 104 | 3634 | 86.2% |
| NAME_7 | ~40 My | 25419 | 892 | 25.1 | 80 | 3007 | 88.2% |
| NAME_8 | (extant sp.) | 23852 | 173 | 121.6 | 871 | 2823 | 88.2% |
| NAME_9 | ~128 My | 28805 | 330 | 69.4 | 849 | 5903 | 79.5% |
| Neopterygii | ~314 My | 25690 | 1269 | 13.3 | 34 | 8842 | 65.6% |
| Oryzias latipes | ~2 My | 24437 | 202 | 104.8 | 818 | 3276 | 86.6% |
| Oryzias | ~10 My | 24024 | 293 | 71.1 | 516 | 3180 | 86.8% |
| Osteoglossiformes | ~163 My | 24029 | 1059 | 19.8 | 46 | 3082 | 87.2% |
| Osteoglossocephalai | ~267 My | 29447 | 1282 | 15.3 | 55 | 9802 | 66.7% |
| Otophysi | ~152 My | 25499 | 1066 | 19.6 | 45 | 4577 | 82.1% |
| Ovalentaria | ~111 My | 32230 | 320 | 73.6 | 933 | 8687 | 73.0% |
| Percomorphaceae | ~128 My | 31142 | 934 | 23.5 | 141 | 9153 | 70.6% |
| Percomorphaceae_A | ~128 My | 31270 | 592 | 37.6 | 537 | 9022 | 71.1% |
| Percomorphaceae_B | ~128 My | 32716 | 373 | 62.0 | 874 | 9585 | 70.7% |
| Pleuronectoidei | ~64 My | 22439 | 313 | 66.4 | 333 | 1664 | 92.6% |
| Poecilia | ~40 My | 26692 | 366 | 62.0 | 634 | 4002 | 85.0% |
| Poeciliinae | ~42 My | 27980 | 336 | 68.1 | 870 | 5111 | 81.7% |
| Pomacentridae | ~67 My | 25389 | 422 | 52.1 | 290 | 3401 | 86.6% |
| Pseudocrenilabrinae | ~22 My | 27810 | 468 | 49.1 | 712 | 4832 | 82.6% |
| Seriola | ~10 My | 24066 | 317 | 68.9 | 293 | 2211 | 90.8% |
| Synbranchiformes | ~73 My | 22773 | 202 | 104.3 | 743 | 1697 | 92.5% |
| Tetraodontidae | ~51 My | 20862 | 530 | 34.9 | 402 | 2347 | 88.7% |
| Tetraodontiformes | ~77 My | 23015 | 301 | 67.8 | 615 | 2595 | 88.7% |
| Xiphophorus | ~2 My | 24275 | 248 | 87.8 | 729 | 2492 | 89.7% |
| |
| Ancestors in Birds |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Anatidae | ~30 My | 16602 | 273 | 55.2 | 255 | 1536 | 90.7% |
| Apteryx | ~10 My | 17412 | 706 | 22.3 | 54 | 1685 | 90.3% |
| Apteryx_b | ~10 My | 16899 | 880 | 17.6 | 35 | 1435 | 91.5% |
| Aves | ~111 My | 22180 | 298 | 57.2 | 502 | 5123 | 76.9% |
| Calidris | ~10 My | 16632 | 328 | 46.6 | 235 | 1353 | 91.9% |
| Estrildinae | ~10 My | 17076 | 254 | 59.1 | 398 | 2068 | 87.9% |
| Galliformes | ~46 My | 17627 | 184 | 84.6 | 514 | 2058 | 88.3% |
| Galloanserae | ~80 My | 18615 | 222 | 72.2 | 522 | 2590 | 86.1% |
| Neognathae | ~105 My | 21605 | 271 | 62.0 | 545 | 4798 | 77.8% |
| Neognathae_b | ~105 My | 20383 | 255 | 64.4 | 469 | 3971 | 80.5% |
| Neognathae_c | ~105 My | 17124 | 240 | 64.2 | 368 | 1722 | 89.9% |
| Palaeognathae | ~62 My | 18282 | 333 | 48.5 | 227 | 2144 | 88.3% |
| Palaeognathae_b | ~62 My | 17672 | 420 | 37.8 | 100 | 1783 | 89.9% |
| Paridae | ~13 My | 16108 | 168 | 87.0 | 426 | 1492 | 90.7% |
| Passerellidae | ~5 My | 15759 | 188 | 76.5 | 338 | 1384 | 91.2% |
| Passeriformes | ~65 My | 19480 | 240 | 66.3 | 529 | 3559 | 81.7% |
| Passeriformes_b | ~65 My | 19448 | 245 | 64.9 | 523 | 3545 | 81.8% |
| Passeriformes_c | ~65 My | 17092 | 198 | 76.0 | 513 | 2047 | 88.0% |
| Passeriformes_d | ~65 My | 19024 | 260 | 60.5 | 457 | 3290 | 82.7% |
| Passeroidea | ~35 My | 17996 | 254 | 60.6 | 398 | 2597 | 85.6% |
| Phasianidae | ~42 My | 17195 | 163 | 94.7 | 510 | 1753 | 89.8% |
| Phasianidae_b | ~42 My | 16205 | 154 | 97.0 | 504 | 1261 | 92.2% |
| Pipridae | ~6 My | 15923 | 221 | 66.4 | 270 | 1239 | 92.2% |
| |
| Ancestors in vertebrates |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Amniota | ~326 My | 26495 | 515 | 34.4 | 311 | 8765 | 66.9% |
| Archelosauria | ~250 My | 24715 | 375 | 48.8 | 394 | 6404 | 74.1% |
| Archosauria | ~236 My | 22195 | 322 | 52.9 | 439 | 5168 | 76.7% |
| Chordata | ~550 My | 10336 | 161 | 2.1 | 2 | 9996 | 3.3% |
| Ciona | ~100 My | 11085 | 1418 | 3.3 | 3 | 6438 | 41.9% |
| Cryptodira | ~161 My | 21449 | 554 | 32.1 | 124 | 3653 | 83.0% |
| Cyclostomata | ~470 My | 13720 | 1241 | 2.3 | 2 | 10811 | 21.2% |
| Episquamata | ~178 My | 21069 | 283 | 61.6 | 598 | 3650 | 82.7% |
| Euteleostomi | ~420 My | 25626 | 2306 | 6.4 | 10 | 10876 | 57.6% |
| Iguania | ~157 My | 19222 | 496 | 33.9 | 99 | 2386 | 87.6% |
| Lepidosauria | ~251 My | 21406 | 419 | 41.7 | 261 | 3924 | 81.7% |
| Sarcopterygii | ~400 My | 24113 | 1604 | 10.0 | 21 | 8116 | 66.3% |
| Sauria | ~267 My | 25596 | 377 | 48.6 | 437 | 7262 | 71.6% |
| Testudinidae | ~53 My | 21133 | 1887 | 9.3 | 16 | 3636 | 82.8% |
| Testudinoidea | ~80 My | 21955 | 757 | 23.9 | 80 | 3855 | 82.4% |
| Tetrapoda | ~359 My | 23777 | 1102 | 14.7 | 39 | 7612 | 68.0% |
| Toxicofera | ~168 My | 20534 | 350 | 49.2 | 308 | 3301 | 83.9% |
| Vertebrata | ~550 My | 16205 | 1085 | 2.3 | 2 | 13665 | 15.7% |
| |
| Other ancestors |
Age |
Genes |
Blocks |
Average size
(nb genes) |
N50 size
(nb genes) |
Genes not
in blocks |
Coverage
(%) |
| Bilateria | ~580 My | 7548 | 69 | 2.1 | 2 | 7406 | 1.9% |
| Ecdysozoa | ~580 My | 7438 | 53 | 2.1 | 2 | 7329 | 1.5% |
| Fungi/Metazoa group | ~1500 My | 2396 | 32 | 2.1 | 2 | 2330 | 2.8% |
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