Genomicus v96.01 Title
Genomicus v96.01 Logo

DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for nodal1 (ENSXETG00000009008) (Frog) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 201 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 191 homologs
Vertebrata Vertebrata ~550 Mya 340 species 187 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 186 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 185 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 184 homologs
Frog Frog ~0 Mya 1 species 8 homologs (dupl. node)
7 homologs (dupl. node)
6 homologs (dupl. node)
1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'