Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for TP53 (ENSRBIG00000038164) (Black snub-nosed monkey)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species	1060 homologs (oldest homol.)
Chordata	~550 Mya	344 species	1057 homologs
Vertebrata	~550 Mya	340 species	1049 homologs (dupl. node) 354 homologs
Euteleostomi	~420 Mya	336 species	351 homologs
Sarcopterygii	~400 Mya	240 species	239 homologs
Tetrapoda	~359 Mya	238 species	237 homologs
Amniota	~326 Mya	236 species	235 homologs
Mammalia	~184 Mya	168 species	206 homologs
Theria	~166 Mya	166 species	204 homologs
Eutheria	~102 Mya	158 species	196 homologs
Boreoeutheria	~95 Mya	149 species	164 homologs
Euarchontoglires	~90 Mya	104 species	118 homologs
Primates	~83 Mya	45 species	51 homologs
Haplorrhini	~57 Mya	38 species	44 homologs
Simiiformes	~45 Mya	36 species	42 homologs
Catarrhini	~30 Mya	29 species	29 homologs
Cercopithecidae	~19 Mya	17 species	17 homologs
Colobinae	~14 Mya	6 species	6 homologs
Rhinopithecus	~3 Mya	3 species	3 homologs
Black snub-nosed monkey	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here