Root species for CBFA2T3 (ENSODEG00000004615) (Degu) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | |
Bilateria | ~580 Mya | 348 species | 1104 homologs (oldest homol.) |
Chordata | ~550 Mya | 344 species | 1101 homologs |
Vertebrata | ~550 Mya | 340 species | 1100 homologs (dupl. node) 374 homologs |
Euteleostomi | ~420 Mya | 336 species | 373 homologs |
Sarcopterygii | ~400 Mya | 240 species | 268 homologs |
Tetrapoda | ~359 Mya | 238 species | 266 homologs |
Amniota | ~326 Mya | 236 species | 264 homologs |
Mammalia | ~184 Mya | 168 species | 176 homologs |
Theria | ~166 Mya | 166 species | 172 homologs |
Eutheria | ~102 Mya | 158 species | 164 homologs |
Boreoeutheria | ~95 Mya | 149 species | 152 homologs |
Euarchontoglires | ~90 Mya | 104 species | 109 homologs |
Glires | ~81 Mya | 57 species | 56 homologs |
Rodentia | ~80 Mya | 53 species | 52 homologs |
Hystricomorpha | ~42 Mya | 13 species | 13 homologs |
Hystricomorpha_a | ~35 Mya | 7 species | 7 homologs |
Hystricomorpha_b | ~32 Mya | 3 species | 3 homologs |
Degu | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'