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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Il18rap (ENSRNOG00000054218) (Rat) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species 2283 homologs (oldest homol. - dupl. node)
1950 homologs (dupl. node)
1076 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1075 homologs (dupl. node)
1060 homologs (dupl. node)
698 homologs (dupl. node)
318 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 315 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 243 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 242 homologs
Amniota Amniota ~326 Mya 236 species 240 homologs
Mammalia Mammalia ~184 Mya 168 species 171 homologs
Theria Theria ~166 Mya 166 species 167 homologs
Eutheria Eutheria ~102 Mya 158 species 159 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 150 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 105 homologs
Glires Glires ~81 Mya 57 species 56 homologs
Rodentia Rodentia ~80 Mya 53 species 52 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 42 homologs
Myomorpha Myomorpha ~51 Mya 28 species 32 homologs
Muroidea Muroidea ~44 Mya 26 species 31 homologs
Muridae Muridae ~29 Mya 24 species 29 homologs
Murinae Murinae ~20 Mya 11 species 17 homologs
Rat Rat ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'