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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for P2ry4 (ENSPEMG00000030887) (Northern American deer mouse) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species 2512 homologs (oldest homol. - dupl. node)
2150 homologs (dupl. node)
1769 homologs (dupl. node)
1656 homologs (dupl. node)
1309 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 1308 homologs (dupl. node)
623 homologs (dupl. node)
295 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 199 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 197 homologs
Amniota Amniota ~326 Mya 236 species 195 homologs
Mammalia Mammalia ~184 Mya 168 species 130 homologs
Theria Theria ~166 Mya 166 species 129 homologs
Eutheria Eutheria ~102 Mya 158 species 124 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 120 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 88 homologs
Glires Glires ~81 Mya 57 species 51 homologs
Rodentia Rodentia ~80 Mya 53 species 48 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 39 homologs
Myomorpha Myomorpha ~51 Mya 28 species 28 homologs
Muroidea Muroidea ~44 Mya 26 species 26 homologs
Muridae Muridae ~29 Mya 24 species 24 homologs
Cricetidae Cricetidae ~20 Mya 11 species 11 homologs
Cricetidae_B Cricetidae_B ~18 Mya 3 species 3 homologs
Northern American deer mouse Northern American deer mouse ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'