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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for pa2g4b (ENSSLDG00000005092) (Yellowtail amberjack) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species 139 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 340 species 136 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 132 homologs
Neopterygii Neopterygii ~314 Mya 95 species 89 homologs
Osteoglossocephalai Osteoglossocephalai ~267 Mya 93 species 88 homologs
Clupeocephala Clupeocephala ~229 Mya 89 species 87 homologs
Euteleosteomorpha Euteleosteomorpha ~206 Mya 81 species 80 homologs
Acanthomorphata Acanthomorphata ~148 Mya 79 species 78 homologs
Percomorphaceae Percomorphaceae ~128 Mya 77 species 76 homologs
Percomorphaceae_A Percomorphaceae_A ~128 Mya 75 species 74 homologs
Percomorphaceae_B Percomorphaceae_B ~128 Mya 73 species 72 homologs
NAME_3 NAME_3 ~128 Mya 63 species 62 homologs
NAME_14 NAME_14 ~128 Mya 13 species 13 homologs
Carangaria Carangaria ~83 Mya 7 species 7 homologs
Seriola Seriola ~10 Mya 3 species 3 homologs
Yellowtail amberjack Yellowtail amberjack ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'