Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for POU3F3 (ENSMVIG00005017313) (Golden-collared manakin)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species
Chordata	~550 Mya	344 species
Vertebrata	~550 Mya	340 species
Euteleostomi	~420 Mya	336 species
Sarcopterygii	~400 Mya	240 species
Tetrapoda	~359 Mya	238 species	172 homologs (oldest homol.)
Amniota	~326 Mya	236 species	170 homologs
Sauria	~267 Mya	67 species	57 homologs
Archelosauria	~250 Mya	57 species	48 homologs
Archosauria	~236 Mya	49 species	42 homologs
Aves	~111 Mya	47 species	40 homologs
Neognathae	~105 Mya	37 species	31 homologs
Neognathae_b	~105 Mya	25 species	20 homologs
Passeriformes	~65 Mya	19 species	14 homologs
Pipridae	~6 Mya	3 species	3 homologs
Golden-collared manakin	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here