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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for GDF3 (ENSVPAG00000004638) (Alpaca) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species
Euteleostomi Euteleostomi ~420 Mya 336 species
Sarcopterygii Sarcopterygii ~400 Mya 240 species
Tetrapoda Tetrapoda ~359 Mya 238 species
Amniota Amniota ~326 Mya 236 species
Mammalia Mammalia ~184 Mya 168 species
Theria Theria ~166 Mya 166 species 154 homologs (oldest homol.)
Eutheria Eutheria ~102 Mya 158 species 146 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 137 homologs
Laurasiatheria Laurasiatheria ~88 Mya 44 species 45 homologs
Cetartiodactyla Cetartiodactyla ~61 Mya 13 species 15 homologs
Alpaca Alpaca ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'