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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for SFTPB (ENSMICG00000011514) (Mouse lemur) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species
Euteleostomi Euteleostomi ~420 Mya 336 species 215 homologs (oldest homol.)
Sarcopterygii Sarcopterygii ~400 Mya 240 species 212 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 211 homologs
Amniota Amniota ~326 Mya 236 species 209 homologs
Mammalia Mammalia ~184 Mya 168 species 164 homologs
Theria Theria ~166 Mya 166 species 162 homologs
Eutheria Eutheria ~102 Mya 158 species 154 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 146 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 103 homologs
Primates Primates ~83 Mya 45 species 45 homologs
Strepsirrhini Strepsirrhini ~69 Mya 6 species 6 homologs
Lemuriformes Lemuriformes ~37 Mya 4 species 4 homologs
Mouse lemur Mouse lemur ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'