Root species for MAFA (ENSPVIG00000023323) (Central bearded dragon) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | |
Bilateria | ~580 Mya | 348 species | |
Chordata | ~550 Mya | 344 species | |
Vertebrata | ~550 Mya | 340 species | 280 homologs (oldest homol.) |
Euteleostomi | ~420 Mya | 336 species | 277 homologs |
Sarcopterygii | ~400 Mya | 240 species | 177 homologs |
Tetrapoda | ~359 Mya | 238 species | 173 homologs |
Amniota | ~326 Mya | 236 species | 169 homologs |
Sauria | ~267 Mya | 67 species | 58 homologs |
Lepidosauria | ~251 Mya | 9 species | 8 homologs |
Episquamata | ~178 Mya | 7 species | 6 homologs |
Toxicofera | ~168 Mya | 5 species | 4 homologs |
Iguania | ~157 Mya | 3 species | 2 homologs |
Central bearded dragon | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'