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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Mafa (ENSCGRG00015017538) (Chinese hamster Crigri-PICR) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species 280 homologs (oldest homol.)
Euteleostomi Euteleostomi ~420 Mya 336 species 277 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 177 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 173 homologs
Amniota Amniota ~326 Mya 236 species 169 homologs
Mammalia Mammalia ~184 Mya 168 species 110 homologs
Theria Theria ~166 Mya 166 species 109 homologs
Eutheria Eutheria ~102 Mya 158 species 102 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 101 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 79 homologs
Glires Glires ~81 Mya 57 species 46 homologs
Rodentia Rodentia ~80 Mya 53 species 45 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 32 homologs
Myomorpha Myomorpha ~51 Mya 28 species 23 homologs
Muroidea Muroidea ~44 Mya 26 species 21 homologs
Muridae Muridae ~29 Mya 24 species 19 homologs
Cricetidae Cricetidae ~20 Mya 11 species 6 homologs
Cricetinae Cricetinae ~17 Mya 7 species 3 homologs
Cricetulus griseus Cricetulus griseus ~0 Mya 5 species 2 homologs
Chinese hamster Crigri-PICR Chinese hamster Crigri-PICR ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'