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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for DNAH9 (ENSMMMG00000021155) (Alpin marmot) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 323 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 316 homologs
Vertebrata Vertebrata ~550 Mya 340 species 315 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 302 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 243 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 242 homologs
Amniota Amniota ~326 Mya 236 species 241 homologs
Mammalia Mammalia ~184 Mya 168 species 180 homologs
Theria Theria ~166 Mya 166 species 176 homologs
Eutheria Eutheria ~102 Mya 158 species 168 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 158 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 108 homologs
Glires Glires ~81 Mya 57 species 61 homologs
Rodentia Rodentia ~80 Mya 53 species 57 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 43 homologs
Marmotini Marmotini ~11 Mya 7 species 9 homologs
Alpin marmot Alpin marmot ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'