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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for CDK5 (ENSNLEG00000004100) (Gibbon) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 312 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 308 homologs
Vertebrata Vertebrata ~550 Mya 340 species 307 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 304 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 207 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 205 homologs
Amniota Amniota ~326 Mya 236 species 203 homologs
Mammalia Mammalia ~184 Mya 168 species 173 homologs
Theria Theria ~166 Mya 166 species 172 homologs
Eutheria Eutheria ~102 Mya 158 species 165 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 157 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 115 homologs
Primates Primates ~83 Mya 45 species 60 homologs
Haplorrhini Haplorrhini ~57 Mya 38 species 53 homologs
Simiiformes Simiiformes ~45 Mya 36 species 51 homologs
Catarrhini Catarrhini ~30 Mya 29 species 44 homologs (dupl. node)
38 homologs (dupl. node)
28 homologs
Hominoidea Hominoidea ~25 Mya 11 species 11 homologs
Gibbon Gibbon ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'