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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for TTC25 (ENSOPRG00000008065) (Pika) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 364 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 361 homologs
Vertebrata Vertebrata ~550 Mya 340 species 357 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 351 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 244 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 242 homologs
Amniota Amniota ~326 Mya 236 species 240 homologs
Mammalia Mammalia ~184 Mya 168 species 171 homologs
Theria Theria ~166 Mya 166 species 169 homologs
Eutheria Eutheria ~102 Mya 158 species 159 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 150 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 106 homologs
Glires Glires ~81 Mya 57 species 59 homologs
Lagomorpha Lagomorpha ~48 Mya 3 species 3 homologs
Pika Pika ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'