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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for RGS5 (ENSUPAG00010010151) (Arctic ground squirrel) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species 357 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 340 species 354 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 353 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 251 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 249 homologs
Amniota Amniota ~326 Mya 236 species 247 homologs
Mammalia Mammalia ~184 Mya 168 species 177 homologs
Theria Theria ~166 Mya 166 species 175 homologs
Eutheria Eutheria ~102 Mya 158 species 167 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 156 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 112 homologs
Glires Glires ~81 Mya 57 species 59 homologs
Rodentia Rodentia ~80 Mya 53 species 55 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 41 homologs
Marmotini Marmotini ~11 Mya 7 species 7 homologs
Marmotini_b Marmotini_b ~11 Mya 5 species 5 homologs
Marmotini_c Marmotini_c ~11 Mya 3 species 3 homologs
Arctic ground squirrel Arctic ground squirrel ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'