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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for VDAC1 (ENSPTRG00000017235) (Chimpanzee) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species 1659 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 348 species 1655 homologs
Chordata Chordata ~550 Mya 344 species 1645 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1641 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 1633 homologs (dupl. node)
1619 homologs (dupl. node)
1064 homologs (dupl. node)
553 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 443 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 441 homologs
Amniota Amniota ~326 Mya 236 species 439 homologs
Mammalia Mammalia ~184 Mya 168 species 369 homologs
Theria Theria ~166 Mya 166 species 367 homologs
Eutheria Eutheria ~102 Mya 158 species 358 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 349 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 289 homologs
Primates Primates ~83 Mya 45 species 168 homologs
Haplorrhini Haplorrhini ~57 Mya 38 species 157 homologs
Simiiformes Simiiformes ~45 Mya 36 species 153 homologs (dupl. node)
146 homologs (dupl. node)
72 homologs
Catarrhini Catarrhini ~30 Mya 29 species 67 homologs (dupl. node)
61 homologs (dupl. node)
38 homologs
Hominoidea Hominoidea ~25 Mya 11 species 18 homologs
Hominidae Hominidae ~16 Mya 9 species 16 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 7 species 15 homologs (dupl. node)
7 homologs
Homo/Pan group Homo/Pan group ~5 Mya 5 species 5 homologs
Pan Pan ~3 Mya 3 species 3 homologs
Chimpanzee Chimpanzee ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'