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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for VDAC1 (ENSPSMG00000020419) (Greater bamboo lemur) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species 1664 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 348 species 1660 homologs
Chordata Chordata ~550 Mya 344 species 1650 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1646 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 1638 homologs (dupl. node)
1624 homologs (dupl. node)
1069 homologs (dupl. node)
558 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 448 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 446 homologs
Amniota Amniota ~326 Mya 236 species 444 homologs
Mammalia Mammalia ~184 Mya 168 species 374 homologs
Theria Theria ~166 Mya 166 species 372 homologs
Eutheria Eutheria ~102 Mya 158 species 363 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 354 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 294 homologs
Primates Primates ~83 Mya 45 species 173 homologs
Strepsirrhini Strepsirrhini ~69 Mya 6 species 10 homologs
Lemuriformes Lemuriformes ~37 Mya 4 species 6 homologs
Greater bamboo lemur Greater bamboo lemur ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'