Root species for znf585b (ENSXETG00000000622) (Frog) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | |
Bilateria | ~580 Mya | 348 species | 2304 homologs (oldest homol.) |
Chordata | ~550 Mya | 344 species | 2301 homologs |
Vertebrata | ~550 Mya | 340 species | 2300 homologs (dupl. node) 2231 homologs (dupl. node) 274 homologs (dupl. node) 145 homologs |
Euteleostomi | ~420 Mya | 336 species | 144 homologs (dupl. node) 74 homologs (dupl. node) 58 homologs (dupl. node) 46 homologs |
Sarcopterygii | ~400 Mya | 240 species | 45 homologs |
Tetrapoda | ~359 Mya | 238 species | 44 homologs |
Frog | ~0 Mya | 1 species | 43 homologs (dupl. node) 34 homologs (dupl. node) 17 homologs (dupl. node) 6 homologs (dupl. node) 5 homologs (dupl. node) 4 homologs (dupl. node) 3 homologs (dupl. node) 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'