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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for znf585b (ENSXETG00000000622) (Frog) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 2304 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 2301 homologs
Vertebrata Vertebrata ~550 Mya 340 species 2300 homologs (dupl. node)
2231 homologs (dupl. node)
274 homologs (dupl. node)
145 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 144 homologs (dupl. node)
74 homologs (dupl. node)
58 homologs (dupl. node)
46 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 45 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 44 homologs
Frog Frog ~0 Mya 1 species 43 homologs (dupl. node)
34 homologs (dupl. node)
17 homologs (dupl. node)
6 homologs (dupl. node)
5 homologs (dupl. node)
4 homologs (dupl. node)
3 homologs (dupl. node)
2 homologs (dupl. node)
1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'