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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for FOXC1 (ENSARWG00000001215) (Okarito brown kiwi) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species 417 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 340 species 414 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 408 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 197 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 193 homologs
Amniota Amniota ~326 Mya 236 species 191 homologs
Sauria Sauria ~267 Mya 67 species 56 homologs
Archelosauria Archelosauria ~250 Mya 57 species 48 homologs
Archosauria Archosauria ~236 Mya 49 species 41 homologs
Aves Aves ~111 Mya 47 species 39 homologs
Palaeognathae Palaeognathae ~62 Mya 9 species 7 homologs
Palaeognathae_b Palaeognathae_b ~62 Mya 7 species 6 homologs
Apteryx Apteryx ~10 Mya 5 species 4 homologs
Okarito brown kiwi Okarito brown kiwi ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'