Root species for FOXC1 (ENSLSDG00000013488) (Bengalese finch) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | |
Bilateria | ~580 Mya | 348 species | |
Chordata | ~550 Mya | 344 species | 417 homologs (oldest homol.) |
Vertebrata | ~550 Mya | 340 species | 414 homologs |
Euteleostomi | ~420 Mya | 336 species | 408 homologs |
Sarcopterygii | ~400 Mya | 240 species | 197 homologs |
Tetrapoda | ~359 Mya | 238 species | 193 homologs |
Amniota | ~326 Mya | 236 species | 191 homologs |
Sauria | ~267 Mya | 67 species | 56 homologs |
Archelosauria | ~250 Mya | 57 species | 48 homologs |
Archosauria | ~236 Mya | 49 species | 41 homologs |
Aves | ~111 Mya | 47 species | 39 homologs |
Neognathae | ~105 Mya | 37 species | 31 homologs |
Neognathae_b | ~105 Mya | 25 species | 20 homologs |
Passeriformes | ~65 Mya | 19 species | 15 homologs |
Passeriformes_b | ~65 Mya | 15 species | 10 homologs |
Passeriformes_d | ~65 Mya | 9 species | 6 homologs |
Passeroidea | ~35 Mya | 5 species | 5 homologs |
Estrildinae | ~10 Mya | 3 species | 3 homologs |
Bengalese finch | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'