Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for FOXC1 (ENSPVIG00000022473) (Central bearded dragon)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species
Chordata	~550 Mya	344 species	417 homologs (oldest homol.)
Vertebrata	~550 Mya	340 species	414 homologs
Euteleostomi	~420 Mya	336 species	408 homologs
Sarcopterygii	~400 Mya	240 species	197 homologs
Tetrapoda	~359 Mya	238 species	193 homologs
Amniota	~326 Mya	236 species	191 homologs
Sauria	~267 Mya	67 species	56 homologs
Lepidosauria	~251 Mya	9 species	7 homologs
Episquamata	~178 Mya	7 species	6 homologs
Toxicofera	~168 Mya	5 species	4 homologs
Iguania	~157 Mya	3 species	2 homologs
Central bearded dragon	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here