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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for HOXB3 (ENSHGLG00100017039) (Naked mole-rat male) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species 401 homologs (oldest homol.)
Euteleostomi Euteleostomi ~420 Mya 336 species 398 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 226 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 224 homologs
Amniota Amniota ~326 Mya 236 species 220 homologs
Mammalia Mammalia ~184 Mya 168 species 158 homologs
Theria Theria ~166 Mya 166 species 157 homologs
Eutheria Eutheria ~102 Mya 158 species 150 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 142 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 101 homologs
Glires Glires ~81 Mya 57 species 56 homologs
Rodentia Rodentia ~80 Mya 53 species 52 homologs
Hystricomorpha Hystricomorpha ~42 Mya 13 species 11 homologs
Bathyergidae Bathyergidae ~33 Mya 5 species 4 homologs
Heterocephalus glaber Heterocephalus glaber ~0 Mya 3 species 3 homologs
Naked mole-rat male Naked mole-rat male ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'