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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Fgf4 (ENSMSIG00000029514) (Steppe mouse) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species 428 homologs (oldest homol.)
Euteleostomi Euteleostomi ~420 Mya 336 species 425 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 236 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 234 homologs
Amniota Amniota ~326 Mya 236 species 232 homologs
Mammalia Mammalia ~184 Mya 168 species 170 homologs
Theria Theria ~166 Mya 166 species 168 homologs
Eutheria Eutheria ~102 Mya 158 species 160 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 152 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 112 homologs
Glires Glires ~81 Mya 57 species 69 homologs
Rodentia Rodentia ~80 Mya 53 species 63 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 43 homologs
Myomorpha Myomorpha ~51 Mya 28 species 30 homologs
Muroidea Muroidea ~44 Mya 26 species 28 homologs
Muridae Muridae ~29 Mya 24 species 24 homologs
Murinae Murinae ~20 Mya 11 species 11 homologs
Mus Mus ~7 Mya 9 species 9 homologs
Mus_A Mus_A ~6 Mya 7 species 7 homologs
Mus_B Mus_B ~2 Mya 5 species 5 homologs
Mus_C Mus_C ~2 Mya 3 species 3 homologs
Steppe mouse Steppe mouse ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'