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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for SYPL1 (ENSCJPG00005006609) (Japanese quail) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 1731 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 1728 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1725 homologs (dupl. node)
874 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 871 homologs (dupl. node)
441 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 343 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 341 homologs
Amniota Amniota ~326 Mya 236 species 339 homologs
Sauria Sauria ~267 Mya 67 species 117 homologs (dupl. node)
93 homologs
Archelosauria Archelosauria ~250 Mya 57 species 73 homologs
Archosauria Archosauria ~236 Mya 49 species 55 homologs
Aves Aves ~111 Mya 47 species 53 homologs
Neognathae Neognathae ~105 Mya 37 species 43 homologs
Galloanserae Galloanserae ~80 Mya 11 species 11 homologs
Galliformes Galliformes ~46 Mya 7 species 7 homologs
Phasianidae Phasianidae ~42 Mya 5 species 5 homologs
Japanese quail Japanese quail ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'